78 research outputs found
GTWS-MLrec: Global terrestrial water storage reconstruction by machine learning from 1940 to present
Terrestrial water storage (TWS) includes all forms of water stored on and below the land surface, and is a key determinant of global water and energy budgets. However, TWS data from measurements by the Gravity Recovery and Climate Experiment (GRACE) satellite mission are only available from 2002, limiting global and regional understanding of the long-term trends and variabilities in the terrestrial water cycle under climate change. This study presents long-term (i.e., 1940-2022) and relatively high-resolution (i.e., 0.25°) monthly time series of TWS anomalies over the global land surface. The reconstruction is achieved by using a set of machine learning models with a large number of predictors, including climatic and hydrological variables, land use/land cover data, and vegetation indicators (e.g., leaf area index). The outcome, machine learning-reconstructed TWS estimates (i.e., GTWS-MLrec), fits well with the GRACE/GRACE-FO measurements, showing high correlation coefficients and low biases in the GRACE era. We also evaluate GTWS-MLrec with other independent products such as the land-ocean mass budget, atmospheric and terrestrial water budget in 341 large river basins, and streamflow measurements at 10,168 gauges. The results show that our proposed GTWS-MLrec performs overall as well as or is more reliable than previous TWS datasets. Moreover, our reconstructions successfully reproduce the consequences of climate variability, such as strong El Niño events. GTWS-MLrec dataset consists of three reconstructions based on JPL, CSR and GSFC mascons, three detrended and de-seasonalized reconstructions, and six global average TWS series over land areas, both with and without Greenland and Antarctica. Along with its extensive attributes, GTWS_MLrec can support a wide range of geoscience applications such as better understanding the global water budget, constraining and evaluating hydrological models, climate-carbon coupling, and water resources management. GTWS-MLrec is available on Zenodo through https://zenodo.org/record/8187432 (Yin et al., 2023c)
Topological Properties of Brain Structural Networks Represent Early Predictive Characteristics for the Occurrence of Bipolar Disorder in Patients With Major Depressive Disorder: A 7-Year Prospective Longitudinal Study
Bipolar disorder (BD) and major depressive disorder (MDD) are associated with different brain functional and structural abnormalities, but BD is hard to distinguish from MDD until the first manic or hypomanic episode. The aim of this study was to examine whether the topological properties of the brain structural network could be used to differentiate BD from MDD patients before their first manic/hypomanic episode. Diffusion tensor images were collected from 80 MDD patients and 53 healthy controls (HCs); 78 patients completed the follow-up study lasting 7 years. Among them, 12 patients were converted to BD and 64 patients remained MDD. Topological properties of the brain structural networks at baseline were compared among patients who converted to BD, patients who did not develop BD, and HCs. Patients who converted to BD displayed reduced nodal local efficiency in the left inferior frontal gyrus(IFG) compared with HCs and patients who did not convert to BD. There was no significant difference in the nodal global efficiency among the three groups. The findings suggest that the nodal local efficiency in the left IFG could serve as a potential biomarker to predict the conversion of MDD to BD before the occurrence of the first manic or hypomanic episode
The Application Value of the Central Lymph Node Metastasis Risk Assessment Model in Papillary Thyroid Microcarcinoma of Stage cN0: A Study of 828 Patients
BackgroundThe aim of this study is to build a risk assessment system for central lymph node metastasis (CLNM) in papillary thyroid microcarcinoma (PTMC) of stage cN0 and to explore its application value in clinical practice.MethodsA total of 500 patients with PTMC who underwent thyroid operation from 2013 to 2015 in Ningbo First Hospital were selected as the model group. Independent risk factors related to CLNM in PTMC were analyzed and determined, and a risk assessment system for CLNM was preliminarily established. Furthermore, the clinicopathological data from 328 PTMC patients with the same conditions as the model group from 2016 to 2017 were further collected as the validation group to verify the diagnostic value of the risk assessment system.ResultsThe risk assessment system was based on the score rating (score ≤ 5 was classified as low risk, 6–8 was classified as medium risk, and ≥9 was classified as high-risk). The area under the receiver operating characteristic curve (ROC) was 0.687 (95% CI: 0.635–0.783). According to the risk assessment system, 328 PTMC patients in the validation group were scored. Among the low-risk group, the moderate-risk group, and the high-group, 96.8%, 58.1%, and 43.2% were the CLNM (-) patients, and 3.1%, 41.9%, and 65.8% were CLNM (+) patients, respectively. The area under ROC was 0.837 (95% CI: 0.778–0.869).ConclusionsThe risk assessment system in this study is of diagnostic value and can provide a theoretical foundation for intraoperative decision-making of prophylactic central neck dissection (pCND)
GTWS-MLrec: global terrestrial water storage reconstruction by machine learning from 1940 to present
Terrestrial water storage (TWS) includes all forms of water stored on and below the land surface, and is a key determinant of global water and energy budgets. However, TWS data from measurements by the Gravity Recovery and Climate Experiment (GRACE) satellite mission are only available from 2002, limiting global and regional understanding of the long-term trends and variabilities in the terrestrial water cycle under climate change. This study presents long-term (i.e., 1940–2022) and relatively high-resolution (i.e., 0.25∘) monthly time series of TWS anomalies over the global land surface. The reconstruction is achieved by using a set of machine learning models with a large number of predictors, including climatic and hydrological variables, land use/land cover data, and vegetation indicators (e.g., leaf area index). The outcome, machine-learning-reconstructed TWS estimates (i.e., GTWS-MLrec), fits well with the GRACE/GRACE-FO measurements, showing high correlation coefficients and low biases in the GRACE era. We also evaluate GTWS-MLrec with other independent products such as the land–ocean mass budget, atmospheric and terrestrial water budget in 341 large river basins, and streamflow measurements at 10 168 gauges. The results show that our proposed GTWS-MLrec performs overall as well as, or is more reliable than, previous TWS datasets. Moreover, our reconstructions successfully reproduce the consequences of climate variability such as strong El Niño events. The GTWS-MLrec dataset consists of three reconstructions based on (a) mascons of the Jet Propulsion Laboratory of the California Institute of Technology, the Center for Space Research at the University of Texas at Austin, and the Goddard Space Flight Center of NASA; (b) three detrended and de-seasonalized reconstructions; and (c) six global average TWS series over land areas, both with and without Greenland and Antarctica. Along with its extensive attributes, GTWS_MLrec can support a wide range of geoscience applications such as better understanding the global water budget, constraining and evaluating hydrological models, climate-carbon coupling, and water resources management. GTWS-MLrec is available on Zenodo through https://doi.org/10.5281/zenodo.10040927 (Yin, 2023)
Abnormal Alterations of Regional Spontaneous Neuronal Activity in Inferior Frontal Orbital Gyrus and Corresponding Brain Circuit Alterations: A Resting-State fMRI Study in Somatic Depression
Background: Major depressive disorders often involve somatic symptoms and have been found to have fundamental differences from non-somatic depression (NSD). However, the neural basis of this type of somatic depression (SD) is unclear. The aim of this study is to use the amplitude of low-frequency fluctuation (ALFF) and functional connectivity (FC) analyses to examine the abnormal, regional, spontaneous, neuronal activity and the corresponding brain circuits in SD patients.Methods: 35 SD patients, 25 NSD patients, and 27 matched healthy controls were selected to complete this study. The ALFF and seed-based FC analyses were employed, and the Pearson correlation was determined to observe possible clinical relevance.Results: Compared with NSD, the SD group showed a significant ALFF increase in the right inferior temporal gyrus; a significant ALFF decrease in left hippocampus, right inferior frontal orbital gyrus and left thalamus; and a significant decrease in the FC value between the right inferior frontal orbital gyrus and the left inferior parietal cortex (p < 0.05, corrected). Within the SD group, the mean ALFF value of the right inferior frontal orbital gyrus was associated with the anxiety factor scores (r = –0.431, p = 0.010, corrected).Conclusions: Our findings suggest that abnormal differences in the regional spontaneous neuronal activity of the right inferior frontal orbital gyrus were associated with dysfunction patterns of the corresponding brain circuits during rest in SD patients, including the limbic-cortical systems and the default mode network. This may be an important aspect of the underlying mechanisms for pathogenesis of SD at the neural level
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<p>High-performance liquid chromatography (HPLC) results of (A) commercial surfactin sample, and (B) our extract surfactin of <i>B</i>. <i>subtilis</i> HH2 in LB medium. There were three main peaks (Peak A-C) of the extract and the surfactin standard in the same location.</p
Differentiation of Transformed Bipolar Disorder From Unipolar Depression by Resting-State Functional Connectivity Within Reward Circuit
Previous studies have found that neural functional abnormalities detected by functional magnetic resonance imaging (fMRI) in brain regions implicated in reward processing during reward tasks show promise to distinguish bipolar from unipolar depression (UD), but little is known regarding resting-state functional connectivity (rsFC) within the reward circuit. In this study, we investigated neurobiomarkers for early recognition of bipolar disorder (BD) by retrospectively comparing rsFC within the reward circuit between UD and depressed BD. Sixty-six depressed patients were enrolled, none of whom had ever experienced any manic/hypomanic episodes before baseline. Simultaneously, 40 matched healthy controls (HC) were also recruited. Neuroimaging data of each participant were obtained from resting-state fMRI scans. Some patients began to manifest bipolar disorder (tBD) during the follow-up period. All patients were retrospectively divided into two groups (33 tBD and 33 UD) according to the presence or absence of mania/hypomania in the follow-up. rsFC between key regions of the reward circuit was calculated and compared among groups. Results showed decreased rsFC between the left ventral tegmental area (VTA) and left ventral striatum (VS) in the tBD group compared with the UD group, which showed good accuracy in predicting diagnosis (tBD vs. UD) according to receiver operating characteristic (ROC) analysis. No significant different rsFC was found within the reward circuit between any patient group and HC. Our preliminary findings indicated that bipolar disorder, in early depressive stages before onset of mania/hypomania attacks, already differs from UD in the reward circuit of VTA-VS functional synchronicity at the resting state
Promoter polymorphisms of DNMT3B and the risk of colorectal cancer in Chinese: a case-control study
<p>Abstract</p> <p>Background</p> <p>DNA-methyltransferase-3B (DNMT3B), which plays a role in DNA methylation, is usually aberrant expression involved in carcinogenesis. Polymorphisms of the DNMT3B gene may influence DNMT3B activity on DNA methylation in several cancers, thereby modulating the susceptibility to cancer.</p> <p>Methods</p> <p>DNMT3B -579G>T genotypes and -149C>T were determined by PCR-RFLP and sequencing in 137 colorectal cancer patients and 308 controls matched for age and sex, who did not receive radiotherapy or chemotherapy for newly diagnosed and histopathologically confirmed colorectal cancer. The association between two SNPs of the <it>DNMT3B </it>promoter and the risk of the development of colorectal cancer was analyzed in a population of Chinese.</p> <p>Results</p> <p>The allele frequency of -149C >T among patients and controls was 0.73% versus 0.65%, respectively. The allele frequency of -597G>T for patients and controls was 6.57% versus 11.53%, respectively. Individuals with at least one -149C>T allele were no at a significantly increase risk of colorectal cancer compared with those having a -149TT genotype. However, Individuals with at least one 579G>T allele were decreased risk of colorectal cancer compared with those having a -579TT genotype.</p> <p>Conclusion</p> <p>The relative distribution of -149C>T <it>DNMT3B </it>SNPs among a Chinese population can not be used as a stratification marker to predict an individual's susceptibility to colorectal cancer. However, the DNMT3B -579G>T polymorphism may contribute to the genetic susceptibility to colorectal cancer.</p
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