Deep spectral learning for label-free optical imaging oximetry with uncertainty quantification

Measurement of blood oxygen saturation (sO2) by optical imaging oximetry provides invaluable insight into local tissue functions and metabolism. Despite different embodiments and modalities, all label-free optical-imaging oximetry techniques utilize the same principle of sO2-dependent spectral contrast from haemoglobin. Traditional approaches for quantifying sO2 often rely on analytical models that are fitted by the spectral measurements. These approaches in practice suffer from uncertainties due to biological variability, tissue geometry, light scattering, systemic spectral bias, and variations in the experimental conditions. Here, we propose a new data-driven approach, termed deep spectral learning (DSL), to achieve oximetry that is highly robust to experimental variations and, more importantly, able to provide uncertainty quantification for each sO2 prediction. To demonstrate the robustness and generalizability of DSL, we analyse data from two visible light optical coherence tomography (vis-OCT) setups across two separate in vivo experiments on rat retinas. Predictions made by DSL are highly adaptive to experimental variabilities as well as the depth-dependent backscattering spectra. Two neural-network-based models are tested and compared with the traditional least-squares fitting (LSF) method. The DSL-predicted sO2 shows significantly lower mean-square errors than those of the LSF. For the first time, we have demonstrated en face maps of retinal oximetry along with a pixel-wise confidence assessment. Our DSL overcomes several limitations of traditional approaches and provides a more flexible, robust, and reliable deep learning approach for in vivo non-invasive label-free optical oximetry.R01 CA224911 - NCI NIH HHS; R01 CA232015 - NCI NIH HHS; R01 NS108464 - NINDS NIH HHS; R21 EY029412 - NEI NIH HHSAccepted manuscrip

CloudTree: A Library to Extend Cloud Services for Trees

In this work, we propose a library that enables on a cloud the creation and management of tree data structures from a cloud client. As a proof of concept, we implement a new cloud service CloudTree. With CloudTree, users are able to organize big data into tree data structures of their choice that are physically stored in a cloud. We use caching, prefetching, and aggregation techniques in the design and implementation of CloudTree to enhance performance. We have implemented the services of Binary Search Trees (BST) and Prefix Trees as current members in CloudTree and have benchmarked their performance using the Amazon Cloud. The idea and techniques in the design and implementation of a BST and prefix tree is generic and thus can also be used for other types of trees such as B-tree, and other link-based data structures such as linked lists and graphs. Preliminary experimental results show that CloudTree is useful and efficient for various big data applications

First born model for reflection-mode Fourier ptychographic microscopy

We validate a first Born approximation based model for Reflection-mode Fourier ptychography under the semi-infinite boundary condition. Our model enables optical thickness and absorption recovery with enhanced resolution from thin samples.Published versio

Infrared imaging investigation of temperature fluctuation and spatial distribution for a large laminated lithium ion power battery

The file attached to this record is the author's final peer reviewed version. The Publisher's final version can be found by following the DOI link.The present study investigates the thermal behaviors of a naturally cooled NCM-type LIB (LiNi1−x−yCoxMnyO2 as cathode) from an experimental and systematic approach. The temperature distribution was acquired for different discharge rates and Depth of Discharge (DOD) by the infrared imaging (IR) technology. Two new factors, the temperature variance ( ) and local overheating index (LOH index), were proposed to assess the temperature fluctuation and distribution. Results showed that the heat generation rate was higher on the cathode side than that on the anode side due to the different resistivity of current collectors. For a low-power discharge, the eventual stable high-temperature zone occurred in the center of the battery, while with a high-power discharge, the upper part of the battery was the high temperature region from the very beginning of discharge. It was found that the temperature variance ( ) and local overheating index (LOH index) were capable of holistically exhibiting the temperature non-uniformity both on numerical fluctuation and spatial distribution with varying discharge rates and DOD. With increasing the discharge rate and DOD, temperature distribution showed an increasingly non-uniform trend, especially at the initial and final stage of high-power discharge, the heat accumulation and concentration area increased rapidly

Multi-View 3D Object Detection Network for Autonomous Driving

This paper aims at high-accuracy 3D object detection in autonomous driving scenario. We propose Multi-View 3D networks (MV3D), a sensory-fusion framework that takes both LIDAR point cloud and RGB images as input and predicts oriented 3D bounding boxes. We encode the sparse 3D point cloud with a compact multi-view representation. The network is composed of two subnetworks: one for 3D object proposal generation and another for multi-view feature fusion. The proposal network generates 3D candidate boxes efficiently from the bird's eye view representation of 3D point cloud. We design a deep fusion scheme to combine region-wise features from multiple views and enable interactions between intermediate layers of different paths. Experiments on the challenging KITTI benchmark show that our approach outperforms the state-of-the-art by around 25% and 30% AP on the tasks of 3D localization and 3D detection. In addition, for 2D detection, our approach obtains 10.3% higher AP than the state-of-the-art on the hard data among the LIDAR-based methods.Comment: To appear in IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 201

Inverse scattering for reflection intensity phase microscopy

Reflection phase imaging provides label-free, high-resolution characterization of biological samples, typically using interferometric-based techniques. Here, we investigate reflection phase microscopy from intensity-only measurements under diverse illumination. We evaluate the forward and inverse scattering model based on the first Born approximation for imaging scattering objects above a glass slide. Under this design, the measured field combines linear forward-scattering and height-dependent nonlinear back-scattering from the object that complicates object phase recovery. Using only the forward-scattering, we derive a linear inverse scattering model and evaluate this model's validity range in simulation and experiment using a standard reflection microscope modified with a programmable light source. Our method provides enhanced contrast of thin, weakly scattering samples that complement transmission techniques. This model provides a promising development for creating simplified intensity-based reflection quantitative phase imaging systems easily adoptable for biological research.https://arxiv.org/abs/1912.07709Accepted manuscrip