Counts of different isoforms of miRNA cfa-mir-486-5p in the blood sample.

<p>Counts of different isoforms of miRNA cfa-mir-486-5p in the blood sample.</p

Identification of known and novel miRNA loci.

<p>Identification of known and novel miRNA loci.</p

Results of the computational prediction of miRNA loci, using miRCat and miRDeep2.

<p>Results of the computational prediction of miRNA loci, using miRCat and miRDeep2.</p

MiRNA expression plots and predicted secondary structures.

<p>Different colours in the plot correspond to different tissues as described in C). Green and purple-labelled bases in the hairpin figure indicate the most abundant read mapping to the 5' and 3' ends; conserved miRNA cfa-miR-371 (A) appears to be absent in heart and shows variable expression levels in the other tissues. B) Plots for a novel miRNA located in chromosome 15, supported by small RNA reads from the brain sample.</p

Counts of proTRAC piRNA predictions across tissues.

<p>Counts of proTRAC piRNA predictions across tissues.</p

Annotation of the complete set of miRNAs, based on genomic location.

<p>Annotation of the complete set of miRNAs, based on genomic location.</p

Workflow for the generation of miRNA expression profiles and secondary structures.

<p>Small RNA reads are first mapped (A) to the hairpin sequences, looking for two peak alignment patterns as shown in B (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0153453#pone.0153453.s004" target="_blank">S4</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0153453#pone.0153453.s005" target="_blank">S5</a> Figs). Expression levels across each hairpin (B) and secondary structures (C) are then derived (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0153453#pone.0153453.s006" target="_blank">S6</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0153453#pone.0153453.s007" target="_blank">S7</a> Figs).</p

ASU_Acar_v2.1.cDNA.fa.gz -- A fasta file of the cDNA sequences for each gene transcript in ASU_Acar_v2.1

ASU_Acar_v2.1.cDNA.fa.gz -- A fasta file of the cDNA sequences for each gene transcript in ASU_Acar_v2.

ASU_Acar_v2.1.gtf - The gtf annotation file.

ASU_Acar_v2.1.gtf - The gtf annotation file

ASU_Acar_v2.1.exon.fa -- A fasta file of each exon of each of the transcripts in ASU_Acar_v2.1

Exons are duplicated if they are shared between transcripts