16 research outputs found
exon capture phylogenomics, data and workflows (dryad_34274)
Data and computational workflows to accompany "Exon capture phylogenomics: efficacy across scales of divergence," by Jason Bragg, Sally Potter, Ke Bi and Craig Moritz
concatenated dataset used for RAxML analysis
Concatenated alignment of the complete dataset (1361 loci) and the inferred maximum likelihood RAxML tree (100 tree searches, 1000 bootstrap replicates
Alignments
All 1852 loci (contains both complete and incomplete, up to 1 species missing, alignments
ASTRAL incomplete dataset, ranked locus subsets
The ASTRAL input and output for the summary-coalescent species tree analysis based on the complete dataset. Locus subsets were ranked (i.e. ranked by Tree Certainty score) selected
ASTRAL incomplete dataset, random locus subsets
The ASTRAL input and output for the summary-coalescent species tree analysis based on the incomplete dataset. Locus subsets were randomly (i.e. not ranked by Tree Certainty score) selected
ASTRAL complete dataset, random locus subsets
The ASTRAL input and output for the summary-coalescent species tree analysis based on the complete dataset. Locus subsets were randomly (i.e. not ranked by Tree Certainty score) selected
ASTRAL complete dataset, ranked locus subsets
The ASTRAL input and output for the summary-coalescent species tree analysis based on the complete dataset. Locus subsets were ranked (i.e. ranked by Tree Certainty score) selected
Nicotra et al MEC data archive part 1
Data from phenotype analyses, crossing and autogamy experiments as well as herbarium accession data