internexum_data_deposit

This is a zipped folder that contains the input files for molecular analyses conducted as part of this study

caesiella_alignments

This is a zipped folder containing: 1) the original alignment prior to analyses, 2) the input file for MP (Paup) analyses with recoded ambiguously aligned regions and step matrices, 3) the input file for ML (Paup) analyses, 4) the input file for ML (RAxML) with ambiguously aligned regions recorded, 5) the input file for BI (MrBayes) analyses

neglecta_datasets

This zipped folder includes the nucleotide alignments used in this study. 1) original alignment with exclusion set, 2) alignment for MP in NEXUS format including step matrices and INAASE recoded characters, 3) alignment for ML in PHYLLIP format and 4) alignment for BI in NEXUS forma

data_packet

This is a zipped folder that contains the following files used in analyses for this study: 1) the molecular alignment in NEXUS format with excluded regions, 2) the input file for Bayesian Inference in NEXUS format, 3) the input file for Maximum Likelihood in PHYLIP format, 4) the alignment of only focal group taxa in NEXUS format

incana_data_files

This is a compressed .zip folder containing three nexus formatted files of DNA sequence alignments used for the molecular phylogenetic analyses in this study. The MP and ML files were input into PAUP. The BI file into MrBayes. Refer to the methods section of the paper for additional explanation

Loxospora_datasets

This submission consists of a compressed zip folder that contains the mtSSU and nrITS data sets used in Maximum Likelihood (ML), Maximum Parsimony (MP), ad Bayesian Inference (BI) analyses conducted for this study

internexum_data_deposit

This is a zipped folder that contains the input files for molecular analyses conducted as part of this study

Lecanora_layana_input_files

This is a zipped folder containing the molecular data alignment input files used in the phylogenetic analyses for this study

Melanophloea data packet

This is a zipped folder that contains the alignments used in molecular phylogenetic analyses for this study. Specifically: 1) the original alignment in NEXUS format, 2) the input file for maximum likelihood analyses, and 3) the input file for Bayesian inference

changes_MACP_datapacket

This is a zipped folder containing the following items: 1) alignments of Cladonia nrITS sequences used in Bayesian Inference (BI), maximum likelihood (ML), and maximum parsimony (MP) analyses in this study; 2) alignment of nrITS sequences of Lecanora cinereofusca s.l. used for examination of genetic distance; 3) alignments of mtSSU sequences of Lecanoraceae illustrating the monophyly and phylogenetic placement of Lecanora cinereofusca s.l. used in in Bayesian Inference (BI) and maximum likelihood (ML) analyses in this study