Excitation-energy dependence of the mechanism for two-photon ionization of liquid H2O and D2O from 8.3to12.4eV

This is the publisher's version, also available electronically from http://scitation.aip.org/content/aip/journal/jcp/125/4/10.1063/1.2217738.Transient absorption measurements monitor the geminate recombination kinetics of solvated electrons following two-photonionization of liquid water at several excitation energies in the range from 8.3to12.4eV. Modeling the kinetics of the electron reveals its average ejection length from the hydronium ion and hydroxyl radical counterparts and thus provides insight into the ionization mechanism. The electron ejection length increases monotonically from roughly 0.9nm at 8.3eV to nearly 4nm at 12.4eV, with the increase taking place most rapidly above 9.5eV. We connect our results with recent advances in the understanding of the electronic structure of liquid water and discuss the nature of the ionization mechanism as a function of excitation energy. The isotope dependence of the electron ejection length provides additional information about the ionization mechanism. The electron ejection length has a similar energy dependence for two-photonionization of liquid D(2)O, but is consistently shorter than in H(2)O by about 0.3nm across the wide range of excitation energies studied

Toward An Understanding Of The Retinal Chromophore In Rhodopsin Mimics

Recently, a rhodopsin protein mimic was constructed by combining mutants of the cellular retinoic acid binding protein II (CRABPII) with an all-trans retinal chromophore. Here, we present a combine computational quantum mechanics/molecular mechanics (QM/MM) and experimental ultrafast kinetic study of CRABPII. We employ the QM/MM models to study the absorption (lambda(a)(max)), fluorescence (lambda(f)(max)), and reactivity of a CRABPII triple mutant incorporating the all-trans protonated chromophore (PSB-KLE-CRABPII). We also study the spectroscopy of the same mutant incorporating the unprotonated chromophore and of another double mutant incorporating the neutral unbound retinal molecule held inside the pocket. Finally, for PSB-KLE-CRABPII, stationary fluorescence spectroscopy and ultrafast transient absorption spectroscopy resolved two different evolving excited state populations which were computationally assigned to distinct locally excited and charge-transfer species. This last species is shown to evolve along reaction paths describing a facile isomerization of the biologically relevant 11-cis and 13-cis double bonds. This work represents a first exploratory attempt to model and study these artificial protein systems. It also indicates directions for improving the QM/MM models so that they could be more effectively used to assist the bottom-up design of genetically encodable probes and actuators employing the retinal chromophore

Toward an Understanding of the Retinal Chromophore in Rhodopsin Mimics

11nonenoneHuntress, Mark M.; Samer, Gozem; Malley, Konstantin R.; Jailaubekov, Askat E.; Chrysoula, Vasileiou; Mikas, Vengris; Geiger, James H.; Babak, Borhan; Igor, Schapiro; Larsen, Delmar S.; Olivucci, MassimoMark M., Huntress; Samer, Gozem; Konstantin R., Malley; Askat E., Jailaubekov; Chrysoula, Vasileiou; Mikas, Vengris; James H., Geiger; Babak, Borhan; Igor, Schapiro; Delmar S., Larsen; Olivucci, Massim

Subpicosecond Excited-State Proton Transfer Preceding Isomerization During the Photorecovery of Photoactive Yellow Protein

The ultrafast excited-state dynamics underlying the receptor state photorecovery is resolved in the M100A mutant of the photoactive yellow protein (PYP) from Halorhodospira halophila. The M100A PYP mutant, with its distinctly slower photocycle than wt PYP, allows isolation of the pB signaling state for study of the photodynamics of the protonated chromophore <i>cis-p</i>-coumaric acid. Transient absorption signals indicate a subpicosecond excited-state proton-transfer reaction in the pB state that results in chromophore deprotonation prior to the cis−trans isomerization required in the photorecovery dynamics of the pG state. Two terminal photoproducts are observed, a blue-absorbing species presumed to be deprotonated <i>trans-p</i>-coumaric acid and an ultraviolet-absorbing protonated photoproduct. These two photoproducts are hypothesized to originate from an equilibrium of open and closed folded forms of the signaling state, I₂ and I₂′

Toward an Understanding of the Retinal Chromophore in Rhodopsin Mimics

Recently, a rhodopsin protein mimic was constructed by combining mutants of the cellular retinoic acid binding protein II (CRABPII) with an all-trans retinal chromophore. Here, we present a combined computational quantum mechanics/molecular mechanics (QM/MM) and experimental ultrafast kinetic study of CRABPII. We employ the QM/MM models to study the absorption (λ^a_max), fluorescence (λ^f_max), and reactivity of a CRABPII triple mutant incorporating the all-trans protonated chromophore (PSB-KLE-CRABPII). We also study the spectroscopy of the same mutant incorporating the unprotonated chromophore and of another double mutant incorporating the neutral unbound retinal molecule held inside the pocket. Finally, for PSB-KLE-CRABPII, stationary fluorescence spectroscopy and ultrafast transient absorption spectroscopy resolved two different evolving excited state populations which were computationally assigned to distinct locally excited and charge-transfer species. This last species is shown to evolve along reaction paths describing a facile isomerization of the biologically relevant 11-cis and 13-cis double bonds. This work represents a first exploratory attempt to model and study these artificial protein systems. It also indicates directions for improving the QM/MM models so that they could be more effectively used to assist the bottom-up design of genetically encodable probes and actuators employing the retinal chromophore

Subpicosecond excited-state proton transfer preceding isomerization during the photorecovery of photoactive yellow protein.

The ultrafast excited-state dynamics underlying the receptor state photorecovery is resolved in the M100A mutant of the photoactive yellow protein (PYP) from Halorhodospira halophila. The M100A PYP mutant, with its distinctly slower photocycle than wt PYP, allows isolation of the pB signaling state for study of the photodynamics of the protonated chromophore cis-p-coumaric acid. Transient absorption signals indicate a subpicosecond excited-state proton-transfer reaction in the pB state that results in chromophore deprotonation prior to the cis-trans isomerization required in the photorecovery dynamics of the pG state. Two terminal photoproducts are observed, a blue-absorbing species presumed to be deprotonated trans-p-coumaric acid and an ultraviolet-absorbing protonated photoproduct. These two photoproducts are hypothesized to originate from an equilibrium of open and closed folded forms of the signaling state,