Commencement Program, August (1966)

https://red.mnstate.edu/commencement/1105/thumbnail.jp

Zueva_etal_2018_code&files_for_pictures.tar

code&files_for_pictures (readme file inside package

Zueva_etal_2018_allelotyping.tar

Allelotyping data for 220,000 SNPs (readme file inside package

Map of northern Europe indicating the study populations: anadromous Atlantic Ocean, <i>G. salaris</i> susceptible (red); anadromous Baltic, moderately resistant (blue); landlocked, resistant to the parasite (green).

<p>Map of northern Europe indicating the study populations: anadromous Atlantic Ocean, <i>G. salaris</i> susceptible (red); anadromous Baltic, moderately resistant (blue); landlocked, resistant to the parasite (green).</p

Final overlap of results based on all applied designs: genome-wide evidence of directional selection.

<p>Vertical coloured shadings (green) show genomic regions, where two or three regions detected by kernel-smoothing-based designs overlap. “Parasite” (red) and “salinity” (blue) single outlier SNPs from design 4 are plotted as smaller vertical lines. Chromosome numbers are given, chromosomes bearing regions exclusively containing “parasite outliers” are marked with red font colour, and “salinity outliers” - with blue.</p

Results of the landscape genomics analysis (LFMM).

<p><b>N of outliers</b>: number (and % from the total) of SNPs correlated with environmental characteristics.</p><p><b>N of unique outliers</b>: subset (and % from N of outliers) of SNPs which are correlated only with a given characteristic.</p

Analysis workflow and implementation of each of the methodological designs used.

<p>Analysis workflow and implementation of each of the methodological designs used.</p

Example of the results of a candidate region analysis (chromosome 23, design 1): search for regions of reduced genetic diversity in landlocked populations.

<p>A. One of the three populations, LL_PYA. SNP <i>GD</i> values (black dots), kernel-smoothed distribution of GD (black line) along the chromosome and the 99% confidence interval (area within grey lines) are shown. Distributions of logarithmically scaled p-values for elevated (blue) and reduced (red) GD statistic are plotted below. B. Smoothed <i>GD</i> curves for all three populations. Horizontal bars indicate regions of significant (p≤0.01) reduction of GD. Vertical grey shading represents region which is significant in all three populations and which has been considered further as one of a candidate regions under selection, detected by design 1.</p