Untargeted LC-HRMS-based metabolomics to identify novel biomarkers of metastatic colorectal cancer

Colorectal cancer is one of the main causes of cancer death worldwide, and novel biomarkers are urgently needed for its early diagnosis and treatment. The utilization of metabolomics to identify and quantify metabolites in body fluids may allow the detection of changes in their concentrations that could serve as diagnostic markers for colorectal cancer and may also represent new therapeutic targets. Metabolomics generates a pathophysiological ‘fingerprint’ that is unique to each individual. The purpose of our study was to identify a differential metabolomic signature for metastatic colorectal cancer. Serum samples from 60 healthy controls and 65 patients with metastatic colorectal cancer were studied by liquid chromatography coupled to high-resolution mass spectrometry in an untargeted metabolomic approach. Multivariate analysis revealed a separation between patients with metastatic colorectal cancer and healthy controls, who significantly differed in serum concentrations of one endocannabinoid, two glycerophospholipids, and two sphingolipids. These findings demonstrate that metabolomics using liquid-chromatography coupled to high-resolution mass spectrometry offers a potent diagnostic tool for metastatic colorectal cancer.This study was supported by a grant (n° 15CC056/DTS17/00081- ISCIII-FEDER) from the Fundación para la Investigación Biosanitaria de Andalucía Oriental (FIBAO) and Roche Pharma S.L. Authors from the Fundación MEDINA acknowledge the receipt of financial support from this public-private partnership of Merck Sharp & Dohme de España S.A. with the University of Granada and Andalusian Regional Government (PIN-0474-2016)

Bacteria-inducing legume nodules involved in the improvement of plant growth, health and nutrition

Bacteria-inducing legume nodules are known as rhizobia and belong to the class Alphaproteobacteria and Betaproteobacteria. They promote the growth and nutrition of their respective legume hosts through atmospheric nitrogen fixation which takes place in the nodules induced in their roots or stems. In addition, rhizobia have other plant growth-promoting mechanisms, mainly solubilization of phosphate and production of indoleacetic acid, ACC deaminase and siderophores. Some of these mechanisms have been reported for strains of rhizobia which are also able to promote the growth of several nonlegumes, such as cereals, oilseeds and vegetables. Less studied are the mechanisms that have the rhizobia to promote the plant health; however, these bacteria are able to exert biocontrol of some phytopathogens and to induce the plant resistance. In this chapter, we revised the available data about the ability of the legume nodule-inducing bacteria for improving the plant growth, health and nutrition of both legumes and nonlegumes. These data showed that rhizobia meet all the requirements of sustainable agriculture to be used as bio-inoculants allowing the total or partial replacement of chemicals used for fertilization or protection of crops

Earthquake geology of Kashmir Basin and its implications for future large earthquakes

Two major traces of active thrust faults were identified in the Kashmir Basin (KB) using satellite images and by mapping active geomorphic features. The ~N130°E strike of the mapped thrust faults is consistent with the regional ~NE–SW convergence along the Indian–Eurasian collision zone. The ~NE dipping thrust faults have uplifted the young alluvial fan surfaces at the SW side of the KB. This created a major tectono-geomorphic boundary along the entire strike length of the KB that is characterised by (1) a low relief with sediment-filled sluggish streams to the SE and (2) an uplifted region, with actively flowing streams to the SW. The overall tectono-geomorphic expression suggests that recent activity along these faults has tilted the entire Kashmir valley towards NE. Further, the Mw 7.6 earthquake, which struck Northern Pakistan and Kashmir on 8 October 2005, also suggests a similar strike and NE dipping fault plane, which could indicate that the KB fault is continuous over a distance of ~210 km and connects on the west with the Balakot Bagh fault. However, the geomorphic and the structural evidences of such a structure are not very apparent on the north-west, which thus suggest that it is not a contiguous structure with the Balakot Bagh fault.Therefore, it is more likely that the KB fault is an independent thrust, a possible ramp on the Main Himalayan Thrust, which has uplifting the SW portion of the KB and drowning everything to the NE (e.g. Madden et al. 2011). Furthermore, it seems very likely that the KB fault could be a right stepping segment of the Balakot Bagh fault, similar to Riasi Thrust, as proposed by Thakur et al. (2010). The earthquake magnitude is measured by estimating the fault rupture parameters (e.g. Wells and Coppersmith in Bull Seismol Soc Am 84:974–1002, 1994). Therefore, the total strike length of the mapped KB fault is ~120 km and by assuming a dip of 29° (Avouac et al. in Earth Planet Sci Lett 249:514–528, 2006) and a down-dip limit of 20 km, a Mw of 7.6 is possible on this fault