1,997 research outputs found
A modular design strategy to integrate mechanotransduction concepts in scaffold-based bone tissue engineering
Repair or regeneration of load-bearing bones has long been an incentive for the tissue engineering community to develop a plethora of synthetic bone scaffolds. Despite the key role of physical forces and the mechanical environment in bone regeneration, the mechanotransduction concept has rarely been incorporated in structural design of bone tissue scaffolds, particularly those made of bioactive materials such as hydrogels and bioceramics. Herein, we introduce a modular design strategy to fabricate a load bearing device that can support a wide range of hydrogel- and ceramic-based scaffolds against complex in-vivo loading conditions to induce desirable mechanical strains for bone regeneration within the scaffolds. The device is comprised of a fenestrated polymeric shell and ceramic structural pillars arranged in a sophisticated configuration to provide ample internal space for the scaffold, also enabling it to purposely regulate the levels of strains and stresses within the scaffolds. Utilizing this top-down design approach, we demonstrate that the failure load of alginate hydrogels increases 3200-fold in compression, 300-fold in shear and 75-fold in impact, achieving the values that enable them to withstand physiological loads in weight-bearing sites, while allowing generation of osteoinductive strains (i.e., 0.2-0.4%) in the hydrogel. This modular design approach opens a broad range of opportunities to utilize various bioactive but mechanically weak scaffolds for the treatment of load-bearing defects and exploiting mechanobiology strategies to improve bone regeneration
Strong Water Absorption in the Dayside Emission Spectrum of the Planet HD 189733b
Recent observations of the extrasolar planet HD 189733b did not reveal the
presence of water in the emission spectrum of the planet. Yet models of such
'Hot Jupiter' planets predict an abundance of atmospheric water vapour.
Validating and constraining these models is crucial for understanding the
physics and chemistry of planetary atmospheres in extreme environments.
Indications of the presence of water in the atmosphere of HD 189733b have
recently been found in transmission spectra, where the planet's atmosphere
selectively absorbs the light of the parent star, and in broadband photometry.
Here we report on the detection of strong water absorption in a high
signal-to-noise, mid-infrared emission spectrum of the planet itself. We find
both a strong downturn in the flux ratio below 10 microns and discrete spectral
features that are characteristic of strong absorption by water vapour. The
differences between these and previous observations are significant and admit
the possibility that predicted planetary-scale dynamical weather structures
might alter the emission spectrum over time. Models that match the observed
spectrum and the broadband photometry suggest that heat distribution from the
dayside to the night side is weak. Reconciling this with the high night side
temperature will require a better understanding of atmospheric circulation or
possible additional energy sources.Comment: 11 pages, 1 figure, published in Natur
An adaptive technique for content-based image retrieval
We discuss an adaptive approach towards Content-Based Image Retrieval. It is based on the Ostensive Model of developing information needs—a special kind of relevance feedback model that learns from implicit user feedback and adds a temporal notion to relevance. The ostensive approach supports content-assisted browsing through visualising the interaction by adding user-selected images to a browsing path, which ends with a set of system recommendations. The suggestions are based on an adaptive query learning scheme, in which the query is learnt from previously selected images. Our approach is an adaptation of the original Ostensive Model based on textual features only, to include content-based features to characterise images. In the proposed scheme textual and colour features are combined using the Dempster-Shafer theory of evidence combination. Results from a user-centred, work-task oriented evaluation show that the ostensive interface is preferred over a traditional interface with manual query facilities. This is due to its ability to adapt to the user's need, its intuitiveness and the fluid way in which it operates. Studying and comparing the nature of the underlying information need, it emerges that our approach elicits changes in the user's need based on the interaction, and is successful in adapting the retrieval to match the changes. In addition, a preliminary study of the retrieval performance of the ostensive relevance feedback scheme shows that it can outperform a standard relevance feedback strategy in terms of image recall in category search
Transmembrane helix dynamics of bacterial chemoreceptors supports a piston model of signalling.
Transmembrane α-helices play a key role in many receptors, transmitting a signal from one side to the other of the lipid bilayer membrane. Bacterial chemoreceptors are one of the best studied such systems, with a wealth of biophysical and mutational data indicating a key role for the TM2 helix in signalling. In particular, aromatic (Trp and Tyr) and basic (Arg) residues help to lock α-helices into a membrane. Mutants in TM2 of E. coli Tar and related chemoreceptors involving these residues implicate changes in helix location and/or orientation in signalling. We have investigated the detailed structural basis of this via high throughput coarse-grained molecular dynamics (CG-MD) of Tar TM2 and its mutants in lipid bilayers. We focus on the position (shift) and orientation (tilt, rotation) of TM2 relative to the bilayer and how these are perturbed in mutants relative to the wildtype. The simulations reveal a clear correlation between small (ca. 1.5 Å) shift in position of TM2 along the bilayer normal and downstream changes in signalling activity. Weaker correlations are seen with helix tilt, and little/none between signalling and helix twist. This analysis of relatively subtle changes was only possible because the high throughput simulation method allowed us to run large (n = 100) ensembles for substantial numbers of different helix sequences, amounting to ca. 2000 simulations in total. Overall, this analysis supports a swinging-piston model of transmembrane signalling by Tar and related chemoreceptors
The Goldbeter-Koshland switch in the first-order region and its response to dynamic disorder
In their classical work (Proc. Natl. Acad. Sci. USA, 1981, 78:6840-6844),
Goldbeter and Koshland mathematically analyzed a reversible covalent
modification system which is highly sensitive to the concentration of
effectors. Its signal-response curve appears sigmoidal, constituting a
biochemical switch. However, the switch behavior only emerges in the
"zero-order region", i.e. when the signal molecule concentration is much lower
than that of the substrate it modifies. In this work we showed that the
switching behavior can also occur under comparable concentrations of signals
and substrates, provided that the signal molecules catalyze the modification
reaction in cooperation. We also studied the effect of dynamic disorders on the
proposed biochemical switch, in which the enzymatic reaction rates, instead of
constant, appear as stochastic functions of time. We showed that the system is
robust to dynamic disorder at bulk concentration. But if the dynamic disorder
is quasi-static, large fluctuations of the switch response behavior may be
observed at low concentrations. Such fluctuation is relevant to many biological
functions. It can be reduced by either increasing the conformation
interconversion rate of the protein, or correlating the enzymatic reaction
rates in the network.Comment: 23 pages, 4 figures, accepted by PLOS ON
Exoplanet Atmosphere Measurements from Transmission Spectroscopy and other Planet-Star Combined Light Observations
It is possible to learn a great deal about exoplanet atmospheres even when we
cannot spatially resolve the planets from their host stars. In this chapter, we
overview the basic techniques used to characterize transiting exoplanets -
transmission spectroscopy, emission and reflection spectroscopy, and full-orbit
phase curve observations. We discuss practical considerations, including
current and future observing facilities and best practices for measuring
precise spectra. We also highlight major observational results on the
chemistry, climate, and cloud properties of exoplanets.Comment: Accepted review chapter; Handbook of Exoplanets, eds. Hans J. Deeg
and Juan Antonio Belmonte (Springer-Verlag). 22 pages, 6 figure
Parental transfer of the antimicrobial protein LBP/BPI protects Biomphalaria glabrata eggs against oomycete infections
Copyright: © 2013 Baron et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Funding: This work was funded by ANR (ANR-07-BLAN-0214 and ANR-12-EMMA-00O7-01), CNRS and INRA. PvW was financially supported by the BBSRC. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Peer reviewedPublisher PD
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The mirror neuron system as revealed through neonatal imitation: presence from birth, predictive power, and evidence of plasticity
There is strong evidence that neonates imitate previously unseen behaviors. These behaviors are predominantly used in social interactions, demonstrating neonates’ ability and motivation to engage with others. Research on neonatal imitation can provide a wealth of information about the early mirror neuron system (MNS): namely, its functional characteristics, its plasticity from birth, and its relation to skills later in development. Though numerous studies document the existence of neonatal imitation in the laboratory, little is known about its natural occurrence during parent-infant interactions and its plasticity as a consequence of experience. We review these critical aspects of imitation, which we argue are necessary for understanding the early action-perception system. We address common criticisms and misunderstandings about neonatal imitation and discuss methodological differences among studies. Recent work reveals that individual differences in neonatal imitation positively correlate with later social, cognitive, and motor development. We propose that such variation in neonatal imitation could reflect important individual differences of the MNS. Although postnatal experience is not necessary for imitation, we present evidence that neonatal imitation is influenced by experience in the first week of life
Signal duration and the time scale dependence of signal integration in biochemical pathways
Signal duration (e.g. the time scales over which an active signaling
intermediate persists) is a key regulator of biological decisions in myriad
contexts such as cell growth, proliferation, and developmental lineage
commitments. Accompanying differences in signal duration are numerous
downstream biological processes that require multiple steps of biochemical
regulation. Here, we present an analysis that investigates how simple
biochemical motifs that involve multiple stages of regulation can be
constructed to differentially process signals that persist at different time
scales. We compute the dynamic gain within these networks and resulting power
spectra to better understand how biochemical networks can integrate signals at
different time scales. We identify topological features of these networks that
allow for different frequency dependent signal processing properties. Our
studies suggest design principles for why signal duration in connection with
multiple steps of downstream regulation is a ubiquitous control motif in
biochemical systems.Comment: 27 pages, 4 figure
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