593 research outputs found
The Gluonic Field of a Heavy Quark in Conformal Field Theories at Strong Coupling
We determine the gluonic field configuration sourced by a heavy quark
undergoing arbitrary motion in N=4 super-Yang-Mills at strong coupling and
large number of colors. More specifically, we compute the expectation value of
the operator tr[F^2+...] in the presence of such a quark, by means of the
AdS/CFT correspondence. Our results for this observable show that signals
propagate without temporal broadening, just as was found for the expectation
value of the energy density in recent work by Hatta et al. We attempt to shed
some additional light on the origin of this feature, and propose a different
interpretation for its physical significance. As an application of our general
results, we examine when the quark undergoes oscillatory motion,
uniform circular motion, and uniform acceleration. Via the AdS/CFT
correspondence, all of our results are pertinent to any conformal field theory
in 3+1 dimensions with a dual gravity formulation.Comment: 1+38 pages, 16 eps figures; v2: completed affiliation; v3: corrected
typo, version to appear in JHE
The host metabolite D-serine contributes to bacterial niche specificity through gene selection
Escherichia coli comprise a diverse array of both commensals and niche-specific pathotypes. The ability to cause disease results from both carriage of specific virulence factors and regulatory control of these via environmental stimuli. Moreover, host metabolites further refine the response of bacteria to their environment and can dramatically affect the outcome of the hostâpathogen interaction. Here, we demonstrate that the host metabolite, D-serine, selectively affects gene expression in E. coli O157:H7. Transcriptomic profiling showed exposure to D-serine results in activation of the SOS response and suppresses expression of the Type 3 Secretion System (T3SS) used to attach to host cells. We also show that concurrent carriage of both the D-serine tolerance locus (dsdCXA) and the locus of enterocyte effacement pathogenicity island encoding a T3SS is extremely rare, a genotype that we attribute to an âevolutionary incompatibilityâ between the two loci. This study demonstrates the importance of co-operation between both core and pathogenic genetic elements in defining niche specificity
Early-Time Energy Loss in a Strongly-Coupled SYM Plasma
We carry out an analytic study of the early-time motion of a quark in a
strongly-coupled maximally-supersymmetric Yang-Mills plasma, using the AdS/CFT
correspondence. Our approach extracts the first thermal effects as a small
perturbation of the known quark dynamics in vacuum, using a double expansion
that is valid for early times and for (moderately) ultrarelativistic quark
velocities. The quark is found to lose energy at a rate that differs
significantly from the previously derived stationary/late-time result: it
scales like T^4 instead of T^2, and is associated with a friction coefficient
that is not independent of the quark momentum. Under conditions representative
of the quark-gluon plasma as obtained at RHIC, the early energy loss rate is a
few times smaller than its late-time counterpart. Our analysis additionally
leads to thermally-corrected expressions for the intrinsic energy and momentum
of the quark, in which the previously discovered limiting velocity of the quark
is found to appear naturally.Comment: 39 pages, no figures. v2: Minor corrections and clarifications.
References added. Version to be published in JHE
Does Proximity to Retailers Influence Alcohol and Tobacco Use Among Latino Adolescents?
Despite decades of research surrounding determinants of alcohol and tobacco (A&T) use among adolescents, built environment influences have only recently been explored. This study used ordinal regression on 205 Latino adolescents to explore the influence of the built environment (proximity to A&T retailers) on A&T use, while controlling for recognized social predictors. The sample was 45% foreign-born. A&T use was associated with distance from respondentsâ home to the nearest A&T retailer (â), acculturation (+), parentsâ consistent use of contingency management (â), peer use of A&T (+), skipping school (+), attending school in immediate proximity to the US/Mexico border (+), and the interaction between the distance to the nearest retailer and parentsâ consistent use of contingency management (+). The association between decreasing distance to the nearest A&T retailer and increased A&T use in Latino adolescents reveals an additional risk behavior determinant in the USâMexico border region
f(R) theories
Over the past decade, f(R) theories have been extensively studied as one of
the simplest modifications to General Relativity. In this article we review
various applications of f(R) theories to cosmology and gravity - such as
inflation, dark energy, local gravity constraints, cosmological perturbations,
and spherically symmetric solutions in weak and strong gravitational
backgrounds. We present a number of ways to distinguish those theories from
General Relativity observationally and experimentally. We also discuss the
extension to other modified gravity theories such as Brans-Dicke theory and
Gauss-Bonnet gravity, and address models that can satisfy both cosmological and
local gravity constraints.Comment: 156 pages, 14 figures, Invited review article in Living Reviews in
Relativity, Published version, Comments are welcom
Use of sodC versus ctrA for real-time polymerase chain reaction-based detection of Neisseria meningitidis in sterile body fluids
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
BACKGROUND: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses that occur in vivo are statistically highly significantly associated with intergenic regions that are known or inferred to contain promoters. In this report we investigate how this structural property, either alone or together with other structural and sequence attributes, may be used to search prokaryotic genomes for promoters. RESULTS: We show that the propensity for stress-induced DNA duplex destabilization (SIDD) is closely associated with specific promoter regions. The extent of destabilization in promoter-containing regions is found to be bimodally distributed. When compared with DNA curvature, deformability, thermostability or sequence motif scores within the -10 region, SIDD is found to be the most informative DNA property regarding promoter locations in the E. coli K12 genome. SIDD properties alone perform better at detecting promoter regions than other programs trained on this genome. Because this approach has a very low false positive rate, it can be used to predict with high confidence the subset of promoters that are strongly destabilized. When SIDD properties are combined with -10 motif scores in a linear classification function, they predict promoter regions with better than 80% accuracy. When these methods were tested with promoter and non-promoter sequences from Bacillus subtilis, they achieved similar or higher accuracies. We also present a strictly SIDD-based predictor for annotating promoter sequences in complete microbial genomes. CONCLUSION: In this report we show that the propensity to undergo stress-induced duplex destabilization (SIDD) is a distinctive structural attribute of many prokaryotic promoter sequences. We have developed methods to identify promoter sequences in prokaryotic genomes that use SIDD either as a sole predictor or in combination with other DNA structural and sequence properties. Although these methods cannot predict all the promoter-containing regions in a genome, they do find large sets of potential regions that have high probabilities of being true positives. This approach could be especially valuable for annotating those genomes about which there is limited experimental data
Observation of an Exotic Baryon in Exclusive Photoproduction from the Deuteron
In an exclusive measurement of the reaction , a
narrow peak that can be attributed to an exotic baryon with strangeness
is seen in the invariant mass spectrum. The peak is at
GeV/c with a measured width of 0.021 GeV/c FWHM, which is largely
determined by experimental mass resolution. The statistical significance of the
peak is . The mass and width of the observed peak are
consistent with recent reports of a narrow baryon by other experimental
groups.Comment: 5 pages, 5 figure
An Assessment of the Role of DNA Adenine Methyltransferase on Gene Expression Regulation in E coli
N6-Adenine methylation is an important epigenetic signal, which regulates various processes, such as DNA replication and repair and transcription. In Îł-proteobacteria, Dam is a stand-alone enzyme that methylates GATC sites, which are non-randomly distributed in the genome. Some of these overlap with transcription factor binding sites. This work describes a global computational analysis of a published Dam knockout microarray alongside other publicly available data to throw insights into the extent to which Dam regulates transcription by interfering with protein binding. The results indicate that DNA methylation by DAM may not globally affect gene transcription by physically blocking access of transcription factors to binding sites. Down-regulation of Dam during stationary phase correlates with the activity of TFs whose binding sites are enriched for GATC sites
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