Visualizing landscapes of the superconducting gap in heterogeneous superconductor thin films: geometric influences on proximity effects

The proximity effect is a central feature of superconducting junctions as it underlies many important applications in devices and can be exploited in the design of new systems with novel quantum functionality. Recently, exotic proximity effects have been observed in various systems, such as superconductor-metallic nanowires and graphene-superconductor structures. However, it is still not clear how superconducting order propagates spatially in a heterogeneous superconductor system. Here we report intriguing influences of junction geometry on the proximity effect for a 2D heterogeneous superconductor system comprised of 2D superconducting islands on top of a surface metal. Depending on the local geometry, the superconducting gap induced in the surface metal region can either be confined to the boundary of the superconductor, in which the gap decays within a short distance (~ 15 nm), or can be observed nearly uniformly over a distance of many coherence lengths due to non-local proximity effects.Comment: 17 pages, 4 figure

Evidence of Majorana fermions in an Al - InAs nanowire topological superconductor

Majorana fermions are the only fermionic particles that are expected to be their own antiparticles. While elementary particles of the Majorana type were not identified yet, quasi-particles with Majorana like properties, born from interacting electrons in the solid, were predicted to exist. Here, we present thorough experimental studies, backed by numerical simulations, of a system composed of an aluminum superconductor in proximity to an indium arsenide nanowire, with the latter possessing strong spin-orbit coupling. An induced 1d topological superconductor - supporting Majorana fermions at both ends - is expected to form. We concentrate on the characteristics of a distinct zero bias conductance peak (ZBP), and its splitting in energy, both appearing only with a small magnetic field applied along the wire. The ZBP was found to be robustly tied to the Fermi energy over a wide range of system parameters. While not providing a definite proof of a Majorana state, the presented data and the simulations support strongly its existence

Depression in Patients with Mastocytosis: Prevalence, Features and Effects of Masitinib Therapy

Depression in patients with mastocytosis is often reported but its prevalence and characteristics are not precisely described. In addition, the impact of therapies targeting mast cells proliferation, differentiation and degranulation on psychic symptoms of depression have never been investigated. Our objective was to determine the prevalence and to describe features of depression in a large cohort of mastocytosis patients (n = 288) and to investigate the therapeutic impact of the protein kinase inhibitor masitinib in depression symptoms. The description of depression was based on the analysis of a database with Hamilton scores using Principal Component Analysis (PCA). Efficacy of masitinib therapy was evaluated using non parametric Wilcoxon test for paired data within a three months period (n = 35). Our results show that patients with indolent mastocytosis present an elevated prevalence of depression (64%). Depression was moderate in 56% but severe in 8% of cases. Core symptoms (such as psychic anxiety, depressed mood, work and interests) characterized depression in mastocytosis patients. Masitinib therapy was associated with significant improvement (67% of the cases) of overall depression, with 75% of recovery cases. Global Quality of Life slightly improved after masitinib therapy and did not predicted depression improvement. In conclusion, depression is very frequent in mastocytosis patients and masitinib therapy is associated with the reduction its psychic experiences. We conclude that depression in mastocytosis may originate from processes related to mast cells activation. Masitinib could therefore be a useful treatment for mastocytosis patients with depression and anxiety symptoms

Application of text-mining for updating protein post-translational modification annotation in UniProtKB.

BACKGROUND: The annotation of protein post-translational modifications (PTMs) is an important task of UniProtKB curators and, with continuing improvements in experimental methodology, an ever greater number of articles are being published on this topic. To help curators cope with this growing body of information we have developed a system which extracts information from the scientific literature for the most frequently annotated PTMs in UniProtKB. RESULTS: The procedure uses a pattern-matching and rule-based approach to extract sentences with information on the type and site of modification. A ranked list of protein candidates for the modification is also provided. For PTM extraction, precision varies from 57% to 94%, and recall from 75% to 95%, according to the type of modification. The procedure was used to track new publications on PTMs and to recover potential supporting evidence for phosphorylation sites annotated based on the results of large scale proteomics experiments. CONCLUSIONS: The information retrieval and extraction method we have developed in this study forms the basis of a simple tool for the manual curation of protein post-translational modifications in UniProtKB/Swiss-Prot. Our work demonstrates that even simple text-mining tools can be effectively adapted for database curation tasks, providing that a thorough understanding of the working process and requirements are first obtained. This system can be accessed at http://eagl.unige.ch/PTM/

Spin-resolved Andreev levels and parity crossings in hybrid superconductor–semiconductor nanostructures

The physics and operating principles of hybrid superconductor–semiconductor devices rest ultimately on the magnetic properties of their elementary subgap excitations, usually called Andreev levels. Here we report a direct measurement of the Zeeman effect on the Andreev levels of a semiconductor quantum dot with large electron g-factor, strongly coupled to a conventional superconductor with a large critical magnetic field. This material combination allows spin degeneracy to be lifted without destroying superconductivity. We show that a spin-split Andreev level crossing the Fermi energy results in a quantum phase transition to a spin-polarized state, which implies a change in the fermionic parity of the system. This crossing manifests itself as a zero-bias conductance anomaly at finite magnetic field with properties that resemble those expected for Majorana modes in a topological superconductor. Although this resemblance is understood without evoking topological superconductivity, the observed parity transitions could be regarded as precursors of Majorana modes in the long-wire limit.Chemistry and Chemical Biolog

Eggs-only diet: Its implications for the toxin profile changes and ecology of the marbled sea snake (Aipysurus eydouxii)

10.1007/s00239-004-0138-0Journal of Molecular Evolution60181-89JMEV