Comparative genomics approaches accurately predict deleterious variants in plants

Recent advances in genome resequencing have led to increased interest in prediction of the functional consequences of genetic variants. Variants at phylogenetically conserved sites are of particular interest, because they are more likely than variants at phylogenetically variable sites to have deleterious effects on fitness and contribute to phenotypic variation. Numerous comparative genomic approaches have been developed to predict deleterious variants, but the approaches are nearly always assessed based on their ability to identify known disease-causing mutations in humans. Determining the accuracy of deleterious variant predictions in nonhuman species is important to understanding evolution, domestication, and potentially to improving crop quality and yield. To examine our ability to predict deleterious variants in plants we generated a curated database of 2,910 Arabidopsis thaliana mutants with known phenotypes. We evaluated seven approaches and found that while all performed well, their relative ranking differed from prior benchmarks in humans. We conclude that deleterious mutations can be reliably predicted in A. thaliana and likely other plant species, but that the relative performance of various approaches does not necessarily translate from one species to another

Understanding of hydrogel network formation and its application in the architecture of significantly enhanced hydrogel

An understanding of the physical hydrogel network formation has been obtained by dynamic rheological experiments. The evidence shows that the network formation turns out to be a nucleation-controlled process. It was found that there exists a critical temperature Tc; fiber branching is greatly enhanced when the network formation is performed in the regime of T&lt;Tc (T, the final setting temperature). This finding enables the authors to build significantly enhanced gel networks. So far G&prime; (elastic modulus) of the hydrogel network has been enhanced by 187% while the formation period can be greatly shortened to only 1/20 of the previous process.<br /

Antiflow of kaons in relativistic heavy ion collisions

We compare relativistic transport model calculations to recent data on the sideward flow of neutral strange K^0_s mesons for Au+Au collisions at 6 AGeV. A soft nuclear equation of state is found to describe very well the positive proton flow data measured in the same experiment. In the absence of kaon potential, the K^0 flow pattern is similar to that of protons. The kaon flow becomes negative if a repulsive kaon potential determined from the impulse approximation is introduced. However, this potential underestimates the data which exhibits larger antiflow. An excellent agreement with the data is obtained when a relativistic scalar-vector kaon potential, that has stronger density dependence, is used. We further find that the transverse momentum dependence of directed and elliptic flow is quite sensitive to the kaon potential in dense matter.Comment: 5 pages, Revtex, 4 figure

Synergistic therapeutic effect of arsenic trioxide and radiotherapy in BALB/C nude mice bearing nasopharyngeal carcinoma xenografts

It has been shown that arsenic trioxide (ATO) induced apoptosis in human nasopharyngeal carcinoma cells and inhibited the growth of nasopharyngeal carcinoma xenografts (NPCX) in nude mice. Aim: The present study was designed to determine whether ATO at the non-toxic dose level could potentiate the therapeutic effectiveness of radiation therapy in nasopharyngeal carcinoma, using a BALB/C nude mouse xenograft model. Methods: The mice bearing NPCX were treated with radiation alone (2, 4, and 6 Gy), ATO alone (4 mg/kg/day x 6 days), and ATO plus radiation at the same dosage levels. Time of tumor growth delay (defined as the time necessary for the tumor to grow four-fold of its initial volume after, compared with untreated tumors) and toxic effects were determined. Results: The low dose ATO alone has no pronounced effects on tumor growth delay compared to untreated control. However, compared with radiation alone, the combined regimen delayed the tumor growth by 2–10 days and had no significant toxic effects such as the liver function damage. Conclusions: Combination of ATO at non-toxic dose level and radiation has synergistic effects on tumor growth inhibition in vivo and is well tolerated.Установлено, что триоксид мышьяка (ТОМ) индуцирует апоптоз в клетках карциномы носоглотки человека и ингибирует рост ксенографта карциномы носоглотки у атимических мышей. Цель работы — установить терапевтическую эффективность радиотерапии в комбинации ТОМ в нетоксичной дозе мышам линии BALB/ с ксенографтом карциномы носоглотки. Методы: животные с ксенографтом карциномы носоглотки получали либо только радиотерапию (2, 4 и 6 Гр) или ТОМ (4 мг/кг/день в течение 6 дней), или их комбинацию в тех же режимах и дозах. Задержку роста опухоли определяли как различие во времени, необходимом для достижения опухолью 4-кратного объема по сравнению с начальным объемом в опытной группе versus такового в контрольной группе. Результаты: введение ТОМ в низкой дозе не оказывало выраженного влияния на рост опухоли по сравнению с показателями в конт­рольной группе, а в комбинации с облучением приводило к задержке роста опухоли на 2–12 сут по сравнению с показателями у животных, получавших только лучевую терапию при отсутствии выраженных побочных эффектов. Выводы: комбинация ТОМ в нетоксической дозе и лучевой терапии приводит к ингибированию роста опухоли in vivo и не вызывает побочных эффектов. Ключевые слова: триоксид мышьяка, радиотерапия, ксенографт карциномы носоглотки

Higgs algebraic symmetry of screened system in a spherical geometry

The orbits and the dynamical symmetries for the screened Coulomb potentials and isotropic harmonic oscillators have been studied by Wu and Zeng [Z. B. Wu and J. Y. Zeng, Phys. Rev. A 62,032509 (2000)]. We find the similar properties in the responding systems in a spherical space, whose dynamical symmetries are described by Higgs Algebra. There exists a conserved aphelion and perihelion vector, which, together with angular momentum, constitute the generators of the geometrical symmetry group at the aphelia and perihelia points $(\dot{r}=0)$.Comment: 8 pages, 1 fi

Stability of cenospheres in lightweight cement composites in terms of alkali-silica reaction

10.1016/j.cemconres.2012.02.010Cement and Concrete Research425721-72

Metamaterial Polarization Converter Analysis: Limits of Performance

In this paper we analyze the theoretical limits of a metamaterial converter that allows for linear-to- elliptical polarization transformation with any desired ellipticity and ellipse orientation. We employ the transmission line approach providing a needed level of the design generalization. Our analysis reveals that the maximal conversion efficiency for transmission through a single metamaterial layer is 50%, while the realistic re ection configuration can give the conversion efficiency up to 90%. We show that a double layer transmission converter and a single layer with a ground plane can have 100% polarization conversion efficiency. We tested our conclusions numerically reaching the designated limits of efficiency using a simple metamaterial design. Our general analysis provides useful guidelines for the metamaterial polarization converter design for virtually any frequency range of the electromagnetic waves.Comment: 10 pages, 11 figures, 2 table

Coupled Deformation and Diffusion Process at the Stainless Steel/Carbon Steel Interface in the Deformation Bonding Process

Cylindrical and surface-treated blanks were used to prepare stainless steel/carbon steel composite specimens at different temperatures. The coupled deformation and diffusion of materials at the interface were investigated by SEM and ultrasonic “C” scanning detection. The difference in the elongation of the two metals is shown to result in tearing at the interface in the deformation bonding process. Cracks are mainly located in a more readily expanding substrate and are more pronounced at lower deformation temperatures. With an increase in deformation temperatures, the bonding efficiency also increases significantly, but the diffusion layer thickness is basically the same. The bonding efficiency of composites can be greatly improved by mechanical surface treatment at normal deformation temperatures.Композиты на основе нержавеющей и углеродистой сталей получали при различных температурах с использованием цилиндрических образцов и образцов, подверженных поверхностной обработке. Исследовали совместную деформацию и диффузию материалов вблизи межфазной границы с помощью растровой электронной микроскопии и ультразвукового С-сканирования. Результаты показывают, что различие в удлинении двух металлов приводит к разрыву вблизи межфазной границы в процессе деформационного соединения. Трещины в основном располагаются в легче растяжимой подложке и более резко выражены при низкой температуре деформации. С увеличением температуры деформации качество соединения значительно повышается, но толщина диффузионного слоя в основном одинакова. Качество соединения композитов можно улучшить путем поверхностной механической обработки при нормальной температуре деформации