High-resolution 3D optical microscopy inside the beating zebrafish heart using prospective optical gating

3D fluorescence imaging is a fundamental tool in the study of functional and developmental biology, but effective imaging is particularly difficult in moving structures such as the beating heart. We have developed a non-invasive real-time optical gating system that is able to exploit the periodic nature of the motion to acquire high resolution 3D images of the normally-beating zebrafish heart without any unnecessary exposure of the sample to harmful excitation light. In order for the image stack to be artefact-free, it is essential to use a synchronization source that is invariant as the sample is scanned in 3D. We therefore describe a scheme whereby fluorescence image slices are scanned through the sample while a brightfield camera sharing the same objective lens is maintained at a fixed focus, with correction of sample drift also included. This enables us to maintain, throughout an extended 3D volume, the same standard of synchronization we have previously demonstrated in and near a single 2D plane. Thus we are able image the complete beating zebrafish heart exactly as if the heart had been artificially stopped, but sidestepping this undesirable interference with the heart and instead allowing the heart to beat as normal

Adaptive Optimisation of Illumination Beam Profiles in Fluorescence Microscopy

Wide-field fluorescence microscope techniques such as single/selective plane illumination microscope (SPIM) are typically configured to image large regions of a sample at once. Here the illumination beam provides uniform excitation of several biological features across the region, `sliced' to a thickness of between 5-10 microns. In this paper we propose a simple alteration to the optical configuration of a SPIM by switching the light-sheet- forming cylindrical lens with a spatial light modulator. This has the potential to adaptively reconfigure the light sheet geometry to improve the optical sectioning of specific biological features, rather than the thicker sectioning of several features at once across a larger observation field-of-view. We present a prototype version of such a system, referred to as an Adaptive-SPIM (A-SPIM) system. We then suggest that the direct recording of illumination beam shapes within the working microscope system can better facilitate the analysis and subsequent re-configuration of the illumination beam to a specific geometry, and summarise the design and operation of a device that we have developed specifically for this purpose. We finally present reconstructed quantitative three dimensional flux maps of illumination beams from three microscope configurations taken using this miniature high-dynamic range beam profiling device, comparing the beam geometry of a regular SPIM system with our prototype A-SPIM system, and suggesting future improvements

Light sheet adaptive optics microscope for 3D live imaging

We report on the incorporation of adaptive optics (AO) into the imaging arm of a selective plane illumination microscope (SPIM). SPIM has recently emerged as an important tool for life science research due to its ability to deliver high-speed, optically sectioned, time-lapse microscope images from deep within in vivo selected samples. SPIM provides a very interesting system for the incorporation of AO as the illumination and imaging paths are decoupled and AO may be useful in both paths. In this paper, we will report the use of AO applied to the imaging path of a SPIM, demonstrating significant improvement in image quality of a live GFP-labeled transgenic zebrafish embryo heart using a modal, wavefront sensorless approach and a heart synchronization method. These experimental results are linked to a computational model showing that significant aberrations are produced by the tube holding the sample in addition to the aberration from the biological sample itself

Quality of Surface Waters of the United States 1955

This report contains daily minimum and maximum temperature data for Waller Creek at 23rd Street between the months of March and September 1955.The quality-of-water Investigations of the United States Geological Survey are concerned with chemical and physical characteristics of the surface and groundwater supplies of the Nation. Most of the investigations carried on in cooperation with States and other Federal agencies deal with the amounts of matter in solution and in suspension in streams. The records of chemical analysis, suspended sediment, and temperature for surface waters given in this volume serve as a basis for determining the suitability of the waters examined for industrial, agricultural, and domestic uses insofar as such use is affected by the dissolved or suspended mineral matter in the waters. The discharge of a stream and, to a lesser extent, the chemical quality are related to variations in rainfall and other forms of precipitation. In general, lower concentrations of dissolved solids may be expected during the periods of high flow than during periods of low flow. The concentration in some streams may change materially with relatively small variations in flow, whereas for other streams the quality may remain relatively uniform throughout large ranges in discharge. The quantities of suspended sediment carried by streams are also related to discharge, and during flood periods the sediment concentrations in many streams vary over wide ranges. The regular yearly publication of records of chemical analyses, suspended sediment, and water temperature was begun by the Geological Survey in 1941. The annual records prior to 1948 were published in a single volume for the entire country. Beginning in 1948, the records were published in two volumes, and beginning in 1950, in four volumes, covering the drainage basins shown in figure 1. The samples for which data are given were collected from October 1, 1954, to September 30, 1955. Descriptive statements are given for each sampling station for which regular series of chemical analyses, temperature observations, or sediment determinations have been made. These statements include the location of the stream-sampling station, drainage area, length of time for which records are available, extremes of dissolved solids, hardness, sediment loads, water temperature, and other pertinent data. Records of water discharge of the streams at, or near, the sampling point for the sampling period are included in most tables of analyses. The records are arranged by drainage basins, according to Geological Survey practice in reporting records of streamflow. During the year ended September 30, 1955, 160 regular sampling stations on 100 streams for the study of the chemical character of surface waters were maintained by the Geological Survey in the area covered by this volume. Samples were collected less frequently during the year at many other points. Water temperatures were measured daily at 123 of the regular sampling stations. Not all analyses of samples of surface water collected during the year have been included. Single analyses of an incomplete nature generally have been omitted. Also, determinations made on the daily samples before compositing have not been reported. Specific conductance was usually determined on each daily sample, and as noted in the table headings this information is available for reference at the district offices listed under Division of Work, on page 22. Quantities of suspended sediment are reported for 26 stations during the year ending September 30, 1955. The sediment samples were collected one or more times daily at most stations, depending on the rate of flow and changes in stage of the stream. Sediment samples were collected less frequently during the year at many other points. In connection with measurements of sediment discharge, sizes of sediment particles were determined at 25 of the stations. Material which is transported almost in continuous contact with the stream bed and the material that bounces along the bed in short skips or leaps is termed " bedload" and is not considered in this report. All other undissolved fragmental material in transport is termed "suspended sediment" and generally constitutes the major part of the total sediment load. At the present time no reliable routine method has been developed for determining bedload.Waller Creek Working Grou

Emergent properties in optically bound matter

Sub-micron particles have been observed to spontaneously form regular two-dimensional structures in counterpropagating evanescent laser fields. We show that collective properties of large numbers of optically-trapped particles can be qualitatively different to the properties of small numbers. This is demonstrated both with a computer model and with experimental results. As the number of particles in the structure is increased, optical binding forces can be sufficiently large to overcome the optical landscape imposed by the interference fringes of the laser beams and impose a different, competing structure

Numerical analysis of piled embankments on soft soils

The construction of embankments on soft soils is a common problem. Soft soil cannot sustain external loads without having large deformations. Piled embankments system provides a possible solution for the construction of roads and railways over soft soils. Until now, the system behaviour could only be described by analytical models such as those included in British or German codes. This paper describes research undertaken to investigate the effects of pile embankment construction in soft soils. Experimental results are used to help investigate arching effect developed due to differential settlement between pile and surrounding soft soil. A numerical parametric study was carried out to examine the impact of various soil parameters on the pile-embankment system behaviour. The outcome of the parametric study implemented using numerical analysis has been investigated and discussed throughout this paper. Based on the numerical analysis carried out in this research, it was found that the earth pressure coefficient normalized by the passive earth pressure Kp plotted on a vertical profile at the midpoint between piles can give a good illustration of arching behaviour. The findings presented in this paper can be considered as guides for numerical analysis and design criteria of soil arching for embankments constructed over piles

Adaptive optimisation of illumination beam profiles in fluorescence microscopy

Wide-field fluorescence microscope techniques such as single/selective plane illumination microscope (SPIM) are typically configured to image large regions of a sample at once. Here the illumination beam provides uniform excitation of several biological features across the region, `sliced' to a thickness of between 5-10 microns. In this paper we propose a simple alteration to the optical configuration of a SPIM by switching the light-sheet- forming cylindrical lens with a spatial light modulator. This has the potential to adaptively reconfigure the light sheet geometry to improve the optical sectioning of specific biological features, rather than the thicker sectioning of several features at once across a larger observation field-of-view. We present a prototype version of such a system, referred to as an Adaptive-SPIM (A-SPIM) system. We then suggest that the direct recording of illumination beam shapes within the working microscope system can better facilitate the analysis and subsequent re-configuration of the illumination beam to a specific geometry, and summarise the design and operation of a device that we have developed specifically for this purpose. We finally present reconstructed quantitative three dimensional flux maps of illumination beams from three microscope configurations taken using this miniature high-dynamic range beam profiling device, comparing the beam geometry of a regular SPIM system with our prototype A-SPIM system, and suggesting future improvements

Potato cultivar response to seasonal drought patterns

The ability to minimize potato yield and quality losses due to drought can be greatly improved by understanding the relative responses of different cultivars to seasonal variations in water supply. To address this need, we initiated a two year field experiment to determine the responses of the six potato cultivars to different seasonal drought patterns, including 1) full season irrigation at 100% ET, 2) irrigation at 100% ET terminated during late bulking , 3) full season irrigation at 70% ET , 4) irrigation at 70% ET terminated during late bulking , and 5) a gradual reduction in irrigation from 100% ET during tuber initiation through early bulking, to 70% ET during mid-bulking, and 50% ET through late bulking. GemStar Russet and Ranger Russet, two medium-late maturing cultivars, generally produced the highest yields across the range of drought treatments, but both were fairly sensitive to changes in drought severity. Alturas, a late maturing cultivar, produced relatively high yields with full irrigation, but exhibited the greatest sensitivity to increasing drought severity, particularly when severe late-season water deficits were imposed. Yields for the early maturing cultivar Russet Norkotah were relatively low overall, but it was the least sensitive to changes in drought severity, particularly when late season drought was imposed. Russet Burbank produced comparatively high total yields across the range of drought treatments, but U.S. No. 1 yields were substantially reduced by each seasonal drought pattern. However, it was less sensitive to changes in drought severity than GemStar Russet, Ranger Russet and Alturas. Total and U.S. No. 1 yields for Summit Russet were low for each drought treatment and it exhibited intermediate sensitivity to changes in drought severity. GemStar Russet had the highest water use efficiency based on U.S. No. 1 yield