Changing roles for legumes in Mediterranean agriculture: developments from an Australian perspective

Pulse and pasture legumes have maintained productivity in Mediterranean agricultural systems since antiquity, providing biologically fixed nitrogen and helping to control pests, diseases and weeds. Throughout the last 500 years many species from the Mediterranean basin have been transferred either accidentally or deliberately to the new-world, and integrated into a multitude of farming systems. During the past 30 years biological, economic and environmental forces have caused failure/breakdown of some of these productive systems. This paper examines the factors influencing legume usage in Mediterranean agriculture and uses the changing focus on legumes in southern Australia to illustrate new roles for legumes in evolving farming systems. An essential factor in developing new roles for legumes is the matching of root-nodule bacteria to both legume hosts and soil conditions. New roles for annual and perennial pastures in Mediterranean-type agriculture are discussed in relation to an analysis of the role of root-nodule bacteria in maximising productivity in these systems

Overcoming non-selective nodulation of Lessertia by soil-borne rhizobium in the presence of inoculant mesorhizobium

Background and aims: Legumes of the South African genus Lessertia, along with their microsymbionts, were introduced into the Western Australia wheatbelt. They achieved poor establishment followed by weak summer survival. This was caused in part by low levels of nodulation with the inoculant strains, and by ineffective nodulation with naturalized strains -an example of non-selective nodulation. The aims of this work were to assess Lessertia spp. symbiotic promiscuity, to study the effect of increased doses of an effective inoculant strain (WSM3565) with L. herbacea, and to study the competitive ability and symbiotic performance of different Mesorhizobium strains nodulating L. diffusa. Methods: A glasshouse experiment was set up to evaluate the ability of L. diffusa, L. capitata, L. herbacea and L. excisa to nodulate with inoculants under current use in Western Australia. To assess competitive ability two field experiments were set up at Karridale, Western Australia. L. herbacea was inoculated with the strain WSM3565 at different doses and L. diffusa was inoculated with ten different Mesorhizobium strains. Rhizobia were re-isolated from nodules and their identity confirmed through PCR fingerprinting and sequencing of their partial dnaK. Results: There were differences in promiscuity between different Lessertia spp., where L. herbacea proved to be highly promiscuous under controlled conditions. Increasing the inoculation dose of L. herbacea with WSM3565 did not improve establishment and survival of the legume in the field. Although WSM3565 nodule occupancy improved from 28 to 54 % with higher doses of inoculation, none of the treatments increased L. herbacea yield over the inoculated control. The inoculation of L. diffusa with the strains WSM3598, 3636, 3626 and 3565 resulted in greater biomass production than the uninoculated control. These strains were able to outcompete resident rhizobia and to occupy a high (>60 %) proportion of lateral root nodules. The naturalised strains that achieved nodulation were identified as R. leguminosarum. Conclusion: The high numbers of resident rhizobia and their ability to rapidly nodulate Lessertia spp. are likely to be the main reasons for the low nodule occupancy achieved by some effective inoculant strains with L. diffusa and L. herbacea. Strains WSM 3636 and 3598 were very competitive on nodule occupancy and together with WSM 3565, WSM 3612 and WSM3626, effective on nodule formation and plant growth of L. diffusa despite the high numbers of resident soil rhizobia. These strains and L. diffusa have potential to be introduced as exotic legumes species and rhizobia strains to Western Australia

Identification of tolerance to soil acidity in inoculant strains of Rhizobium leguminosarum bv. trifolii

The acid-soil tolerance of six strains (WU95, NA3001, WSM409, TA1, NA3025 and NA3039) of Rhizobium leguminosarum bv. trifolii was assessed in a three-year cross-row field experiment in an acid sandy soil of pH 4.2. Strains WSM409, NA3039 and WU95 were more acid-soil tolerant than strains NA3025, TA1 and NA3001. Strains WSM409 and NA3039 colonised and persisted in acid-soil to a greater degree than strains TA1 and NA3001. The data from this study clearly identified strain WSM409 as a strain with outstanding potential for improving the production of clovers on acid soils

Establishment and survival of the South African legume Lessertia spp. and rhizobia in Western Australian agricultural systems

Background and aims: The South African herbaceous legume species Lessertia capitata, L. diffusa, L. excisa L. incana and L. herbacea were introduced to Australia to assess plant establishment and survival, as well as the saprophytic ability of their root nodule bacteria (RNB). Methods: Five Lessertia spp., were inoculated with selected RNB strains and were sown in five different agroclimatic areas of the Western Australian wheat-belt during 2007 and 2008. Plant population and summer survival were evaluated in situ. Soil samples and nodules from host plants were also taken from each site. The re-isolated rhizobia were RPO1-PCR fingerprinted and their partial dnaK and nodA genes were sequenced to confirm their identity. Results: Plants achieved only poor establishment followed by weak summer survival. More than 83 % of the rhizobia re-isolated from Lessertia did not correlate with the original inoculants' fingerprints, and were identified as Rhizobium leguminosarum. The nodA sequences of the naturalised strains were also clustered with R. leguminosarum sequences, thus eliminating the likelihood of lateral gene transference from Mesorhizobium and suggesting a competition problem with indigenous rhizobia. Conclusion: The stressful soil conditions and high numbers of resident R. leguminosarum strains in Western Australian soils, and their ability to rapidly nodulate Lessertia spp. but not fix nitrogen are likely to preclude the adoption of Lessertia as an agricultural legume in this region

Genetic diversity and symbiotic effectiveness of Phaseolus vulgaris -nodulating rhizobia in Kenya

Phaseolus vulgaris (common bean) was introduced to Kenya several centuries ago but the rhizobia that nodulate it in the country remain poorly characterised. To address this gap in knowledge, 178 isolates recovered from the root nodules of P. vulgaris cultivated in Kenya were genotyped stepwise by the analysis of genomic DNA fingerprints, PCR-RFLP and 16S rRNA, atpD, recA and nodC gene sequences. Results indicated that P. vulgaris in Kenya is nodulated by at least six Rhizobium genospecies, with most of the isolates belonging to R. phaseoli and a possibly novel Rhizobium species. Infrequently, isolates belonged to R. paranaense, R. leucaenae, R. sophoriradicis and R. aegyptiacum. Despite considerable core-gene heterogeneity among the isolates, only four nodC gene alleles were observed indicating conservation within this gene. Testing of the capacity of the isolates to fix nitrogen (N2) in symbiosis with P. vulgaris revealed wide variations in effectiveness, with ten isolates comparable to R. tropici CIAT 899, a commercial inoculant strain for P. vulgaris. In addition to unveiling effective native rhizobial strains with potential as inoculants in Kenya, this study demonstrated that Kenyan soils harbour diverse P. vulgaris-nodulating rhizobia, some of which formed phylogenetic clusters distinct from known lineages. The native rhizobia differed by site, suggesting that field inoculation of P. vulgaris may need to be locally optimised

Host–strain mediated selection for an effective nitrogen-fixing symbiosis between Trifolium spp. and Rhizobium leguminosarum biovar trifolii

We have previously reported significant strain–host incompatibility between the microsymbiont Rhizobium leguminosarum biovar trifolii and Trifolium spp. related to geographic and phenological barriers. Additionally, we have shown that an effective symbiosis between strains of R. l. trifolii and clover was established despite the soil harbouring ineffective R. l. trifolii capable of nodulating the host. We termed this “selection” for effective symbiosis. This paper reports glasshouse-based experiments to validate and further explore this in situ selection phenomenon. The effect of cell density and strain ratio at the time of inoculation, as well as soil pH, were investigated on two hosts (Trifolium purpureum and Trifolium polymorphum) that were each exposed to one microsymbiont capable and one incapable of N2 fixation. In co-inoculation experiments at a cell density of 104 cells/mL, each host nodulated solely with its effective strain, even when this strain was outnumbered 100-fold by the ineffective strain. However, the selection process ceased when the effective strain was outnumbered 1000-fold. At higher basal cell concentrations of 105–108 cells/mL, selection for WSM1325 to form effective nodulation on T. purpureum was evident, but was significantly reduced as the ratio of ineffective cells in the inoculum increased above 4-fold. The results indicate that the selection mechanism is highly dependent on the basal rhizobial cell density. Soil pH did not significantly alter the process, and both strains grew at similar rates and formed nodules at similar rates. A preliminary investigation into the genetic backgrounds of WSM1325 and WSM2304 revealed that although their 16S rRNA sequences were identical, they have considerable differences in their symbiotic and chromosomal replicons through examination of atpD, GSII and nodD sequences

FFT based option pricing under a mean reverting process with stochastic volatility and jumps

Numerous studies present strong empirical evidence that certain financial assets may exhibit mean reversion, stochastic volatility or jumps. This paper explores the valuation of European options when the underlying asset follows a mean reverting log-normal process with stochastic volatility and jumps. A closed form representation of the characteristic function of the process is derived for the computation of European option prices via the fast Fourier transform. © 2011 Elsevier B.V. All rights reserved

Symbiotic Burkholderia species show diverse arrangements of nif/fix and nod genes and lack typical high-affinity cytochrome cbb3 oxidase genes

Genome analysis of fourteen mimosoid and four papilionoid beta-rhizobia together with fourteen reference alpha-rhizobia for both nodulation (nod) and nitrogen-fixing (nif/fix) genes has shown phylogenetic congruence between 16S rRNA/MLSA (combined 16S rRNA gene sequencing and multilocus sequence analysis) and nif/fix genes, indicating a free-living diazotrophic ancestry of the beta-rhizobia. However, deeper genomic analysis revealed a complex symbiosis acquisition history in the betarhizobia that clearly separates the mimosoid and papilionoid nodulating groups. Mimosoid-nodulating beta-rhizobia have nod genes tightly clustered in the nodBCIJHASU operon, whereas papilionoid-nodulating Burkholderia have nodUSDABC and nodlJ genes, although their arrangement is not canonical because the nod genes are subdivided by the insertion of nif and other genes. Furthermore, the papilionoid Burkholderia spp. contain duplications of several nod and nif genes. The Burkholderia nifHDKEN and fixABC genes are very closely related to those found in free-living diazotrophs. In contrast, nifA is highly divergent between both groups, but the papilionoid species nifA is more similar to alpha-rhizobia nifA than to other groups. Surprisingly, for all Burkholderia, the fixNOQP and fixGHIS genes required for cbb3 cytochrome oxidase production and assembly are missing. In contrast, symbiotic Cupriavidus strains have f1xN0QPGHIS genes, revealing a divergence in the evolution of two distinct electron transport chains required for nitrogen fixation within the beta-rhizobia

Designing the interface to encourage more cognitive processing

Cognitive engineering aims to provide operators with immediate access to as much relevant information as possible. However, this can encourage display-based strategies that do not involve committing information to memory. To overcome this problem, a somewhat counterintuitive method is discussed, based upon the theory of soft constraints [1], that involves delaying access to some critical information by one or two seconds. This design technique induces a more planful and memory-based strategy that can improve recall, develop more planning behavior, improve problem solving, and protect against the negative effects of interruption. Furthermore, we provide some preliminary results that this more memory-intensive strategy can be trained through past experience with high access cost and then used in situations where access cost is minimal. This was the case when only half of the training trials involved a higher access cost. Further research is needed to ascertain how long training effects last and what are the ideal training regimes for different types of task