The effect of a centenary storm on the long-lived seagrass Posidonia oceanica

We used the disturbance resulting from a once in a 100‐yr storm on the northwest Mediterranean coast to examine the extent of the disturbance, the tolerance thresholds to burial, and the medium‐term response of the long‐lived Posidonia oceanica seagrass. Sediment burial at 12 surveyed areas was particularly strong in shallow meadows, with 23% of their surfaces buried, on average, under more than 10 cm of sediment. In contrast, less than 5% of the meadow was affected at deeper locations. At three sites, we tracked short‐term mortality along a gradient of sediment burial. Survival response to burial was clearly nonlinear, with a significant threshold at 4-5 cm, beyond which shoot mortality was 100%. To track medium‐term potential recovery, we established permanent plots subject to three sediment burial levels (0-5, 5-10, and > 10 cm burial) in four meadows. Where the initial shoot mortality was 100%, we recorded no shoot recovery over the 4‐yr period. In the remaining plots, where some shoots remained alive, we detected either further mortality or shoot recovery of 7% per year on average. Extreme storm events can result in sudden catastrophic losses of seagrass cover in shallow P. oceanica meadows. In the long term and due to the long return time of such storms, the species may still be able to recover despite its low recovery potential. However, added anthropogenic stressors, including climate change, may seriously test the ability of long‐lived shallow seagrass ecosystems to resist high‐intensity natural disturbances and may be critical for its persistence

Detecting the impacts of harbour construction on a seagrass habitat and its subsequent recovery

Managing coastal development requires a set of tools to adequately detect ecosystem and water column degradation, but it also demands tools to detect any post-disturbance improvement. Structural seagrass indicators (such as shoot density or cover) are often used to detect or assess disturbances, but while they may be very sensitive to the impact itself, it is unclear if those indicators on their own can effectively reflect recovery at time scales relevant to managers. We used the construction of a harbour affecting a nearby Posidonia oceanica seagrass community to test the ability of a set of indicators (structural and others) to detect alterations and to evaluate their sensitivity to recovery of environmental quality after harbour construction was complete and the disturbance ceased. We used a Beyond Before After Control Impact (BBACI) design to evaluate effects on one impacted and three control meadows where we used structural, morphological, community and physiological indicators (26 in total) to asses disturbance impacts. Additionally, we measured some of the potential environmental factors that could be altered during and after the construction of the harbour and are critical to the survival of the seagrass meadow (light, sediment organic matter, sediment accrual). Harbour construction caused a clear increase in sediment organic matter and in sediment deposition rates, especially fine sand. Light availability was also reduced due to suspended sediments. Sediment and light conditions returned to normal levels 5 and 15 months after the construction began. As expected, seagrass structural indicators responded unequivocally to these environmental changes, with clear reductions in shoot density. Additionally, reduced light conditions quickly resulted in a decline in carbohydrate content in affected meadows. Unexpectedly, we also recorded a significant increase in metal content in plant tissues. No response was detected in the physiological indicators related to eutrophication (e.g. N and P content in tissues) and in morphological (shoot biomass) and community (epiphyte biomass) indicators. More than three years after the completion of the harbour, structural indicators did not show any sign of recovery. In contrast, physiological indicators, mainly heavy metal and carbohydrates content, were much better in detecting the improvement of the environmental conditions over the fairly short period of this study. These results indicate that while structural indicators are critical to evaluate the immediate effect of disturbances and the recovery on impacted systems, specific physiological indicators may be much better suited to determining the timing of environmental quality recovery. The design of impact and monitoring protocols in the wake of coastal developmental projects need to consider the differential effectiveness and time-response of measured indicators carefully

The effect of a centenary storm on the long-lived seagrass Posidonia oceanica

We used the disturbance resulting from a once in a 100‐yr storm on the northwest Mediterranean coast to examine the extent of the disturbance, the tolerance thresholds to burial, and the medium‐term response of the long‐lived Posidonia oceanica seagrass. Sediment burial at 12 surveyed areas was particularly strong in shallow meadows, with 23% of their surfaces buried, on average, under more than 10 cm of sediment. In contrast, less than 5% of the meadow was affected at deeper locations. At three sites, we tracked short‐term mortality along a gradient of sediment burial. Survival response to burial was clearly nonlinear, with a significant threshold at 4-5 cm, beyond which shoot mortality was 100%. To track medium‐term potential recovery, we established permanent plots subject to three sediment burial levels (0-5, 5-10, and > 10 cm burial) in four meadows. Where the initial shoot mortality was 100%, we recorded no shoot recovery over the 4‐yr period. In the remaining plots, where some shoots remained alive, we detected either further mortality or shoot recovery of 7% per year on average. Extreme storm events can result in sudden catastrophic losses of seagrass cover in shallow P. oceanica meadows. In the long term and due to the long return time of such storms, the species may still be able to recover despite its low recovery potential. However, added anthropogenic stressors, including climate change, may seriously test the ability of long‐lived shallow seagrass ecosystems to resist high‐intensity natural disturbances and may be critical for its persistence

Analyses of Expressed Sequence Tags from Apple

The domestic apple (Malus domestica; also known as Malus pumila Mill.) has become a model fruit crop in which to study commercial traits such as disease and pest resistance, grafting, and flavor and health compound biosynthesis. To speed the discovery of genes involved in these traits, develop markers to map genes, and breed new cultivars, we have produced a substantial expressed sequence tag collection from various tissues of apple, focusing on fruit tissues of the cultivar Royal Gala. Over 150,000 expressed sequence tags have been collected from 43 different cDNA libraries representing 34 different tissues and treatments. Clustering of these sequences results in a set of 42,938 nonredundant sequences comprising 17,460 tentative contigs and 25,478 singletons, together representing what we predict are approximately one-half the expressed genes from apple. Many potential molecular markers are abundant in the apple transcripts. Dinucleotide repeats are found in 4,018 nonredundant sequences, mainly in the 5′-untranslated region of the gene, with a bias toward one repeat type (containing AG, 88%) and against another (repeats containing CG, 0.1%). Trinucleotide repeats are most common in the predicted coding regions and do not show a similar degree of sequence bias in their representation. Bi-allelic single-nucleotide polymorphisms are highly abundant with one found, on average, every 706 bp of transcribed DNA. Predictions of the numbers of representatives from protein families indicate the presence of many genes involved in disease resistance and the biosynthesis of flavor and health-associated compounds. Comparisons of some of these gene families with Arabidopsis (Arabidopsis thaliana) suggest instances where there have been duplications in the lineages leading to apple of biosynthetic and regulatory genes that are expressed in fruit. This resource paves the way for a concerted functional genomics effort in this important temperate fruit crop