80 research outputs found
DOT Tomography of the Solar Atmosphere VII. Chromospheric Response to Acoustic Events
We use synchronous movies from the Dutch Open Telescope sampling the
G band, Ca II and Halpha with five-wavelength profile sampling to study the
response of the chromosphere to acoustic events in the underlying photosphere.
We first compare the visibility of the chromosphere in Ca II H and Halpha,
demonstrate that studying the chromosphere requires Halpha data, and summarize
recent developments in understanding why this is so. We construct divergence
and vorticity maps of the photospheric flow field from the G-band images and
locate specific events through the appearance of bright Ca II H grains. The
reaction of the Halpha chromosphere is diagnosed in terms of brightness and
Doppler shift. We show and discuss three particular cases in detail: a regular
acoustic grain marking shock excitation by granular dynamics, a persistent
flasher which probably marks magnetic-field concentration, and an exploding
granule. All three appear to buffet overlying fibrils, most clearly in
Dopplergrams. Although our diagnostic displays to dissect these phenomena are
unprecedentedly comprehensive, adding even more information (photospheric
Doppler tomography and magnetograms, chromospheric imaging and Doppler mapping
in the ultraviolet) is warranted.Comment: accepted by Solar Physic
Recommendations to encourage participation of individuals from diverse backgrounds in psychiatric genetic studies
We present innovative research practices in psychiatric genetic studies to ensure representation of individuals from diverse ancestry, sex assigned at birth, gender identity, age, body shape and size, and socioeconomic backgrounds. Due to histories of inappropriate and harmful practices against marginalized groups in both psychiatry and genetics, people of certain identities may be hesitant to participate in research studies. Yet their participation is essential to ensure diverse representation, as it is incorrect to assume that the same genetic and environmental factors influence the risk for various psychiatric disorders across all demographic groups. We present approaches developed as part of the Eating Disorders Genetics Initiative (EDGI), a study that required tailored approaches to recruit diverse populations across many countries. Considerations include research priorities and design, recruitment and study branding, transparency, and community investment and ownership. Ensuring representation in participants is costly and funders need to provide adequate support to achieve diversity in recruitment in prime awards, not just as supplemental afterthoughts. The need for diverse samples in genetic studies is critical to minimize the risk of perpetuating health disparities in psychiatry and other health research. Although the EDGI strategies were designed specifically to attract and enroll individuals with eating disorders, our approach is broadly applicable across psychiatry and other fields
The Dynamics of Brane-World Cosmological Models
Brane-world cosmology is motivated by recent developments in string/M-theory
and offers a new perspective on the hierarchy problem. In the brane-world
scenario, our Universe is a four-dimensional subspace or {\em brane} embedded
in a higher-dimensional {\em bulk} spacetime. Ordinary matter fields are
confined to the brane while the gravitational field can also propagate in the
bulk, leading to modifications of Einstein's theory of general relativity at
high energies. In particular, the Randall-Sundrum-type models are
self-consistent and simple and allow for an investigation of the essential
non-linear gravitational dynamics. The governing field equations induced on the
brane differ from the general relativistic equations in that there are nonlocal
effects from the free gravitational field in the bulk, transmitted via the
projection of the bulk Weyl tensor, and the local quadratic energy-momentum
corrections, which are significant in the high-energy regime close to the
initial singularity. In this review we discuss the asymptotic dynamical
evolution of spatially homogeneous brane-world cosmological models containing
both a perfect fluid and a scalar field close to the initial singularity. Using
dynamical systems techniques it is found that, for models with a physically
relevant equation of state, an isotropic singularity is a past-attractor in all
orthogonal spatially homogeneous models (including Bianchi type IX models). In
addition, we describe the dynamics in a class of inhomogeneous brane-world
models, and show that these models also have an isotropic initial singularity.
These results provide support for the conjecture that typically the initial
cosmological singularity is isotropic in brane-world cosmology.Comment: Einstein Centennial Review Article: to appear in CJ
Assessment of variation in immunosuppressive pathway genes reveals TGFBR2 to be associated with prognosis of estrogen receptor-negative breast cancer after chemotherapy
Introduction: Tumor lymphocyte infiltration is associated with clinical response to chemotherapy in estrogen receptor (ER) negative breast cancer. To identify variants in immunosuppressive pathway genes associated with prognosis after adjuvant chemotherapy for ER-negative patients, we studied stage I-III invasive breast cancer patients of European ancestry, including 9,334 ER-positive (3,151 treated with chemotherapy) and 2,334 ER-negative patients (1,499 treated with chemotherapy). Methods: We pooled data from sixteen studies from the Breast Cancer Association Consortium (BCAC), and employed two independent studies for replications. Overall 3,610 single nucleotide polymorphisms (SNPs) in 133 genes were genotyped as part of the Collaborative Oncological Gene-environment Study, in which phenotype and clinical data were collected and harmonized. Multivariable Cox proportional hazard regression was used to assess genetic associations with overall survival (OS) and breast
Functional mechanisms underlying pleiotropic risk alleles at the 19p13.1 breast-ovarian cancer susceptibility locus
A locus at 19p13 is associated with breast cancer (BC) and ovarian cancer (OC) risk. Here we analyse 438 SNPs in this region in 46,451 BC and 15,438 OC cases, 15,252 BRCA1 mutation carriers and 73,444 controls and identify 13 candidate causal SNPs associated with serous OC (P=9.2 × 10-20), ER-negative BC (P=1.1 × 10-13), BRCA1-associated BC (P=7.7 × 10-16) and triple negative BC (P-diff=2 × 10-5). Genotype-gene expression associations are identified for candidate target genes ANKLE1 (P=2 × 10-3) and ABHD8 (P<2 × 10-3). Chromosome conformation capture identifies interactions between four candidate SNPs and ABHD8, and luciferase assays indicate six risk alleles increased transactivation of the ADHD8 promoter. Targeted deletion of a region containing risk SNP rs56069439 in a putative enhancer induces ANKLE1 downregulation; and mRNA stability assays indicate functional effects for an ANKLE1 3′-UTR SNP. Altogether, these data suggest that multiple SNPs at 19p13 regulate ABHD8 and perhaps ANKLE1 expression, and indicate common mechanisms underlying breast and ovarian cancer risk
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