Switching model with two habitats and a predator involving group defence

Switching model with one predator and two prey species is considered. The prey species have the ability of group defence. Therefore, the predator will be attracted towards that habitat where prey are less in number. The stability analysis is carried out for two equilibrium values. The theoretical results are compared with the numerical results for a set of values. The Hopf bifuracation analysis is done to support the stability results

On the equivalence between Implicit Regularization and Constrained Differential Renormalization

Constrained Differential Renormalization (CDR) and the constrained version of Implicit Regularization (IR) are two regularization independent techniques that do not rely on dimensional continuation of the space-time. These two methods which have rather distinct basis have been successfully applied to several calculations which show that they can be trusted as practical, symmetry invariant frameworks (gauge and supersymmetry included) in perturbative computations even beyond one-loop order. In this paper, we show the equivalence between these two methods at one-loop order. We show that the configuration space rules of CDR can be mapped into the momentum space procedures of Implicit Regularization, the major principle behind this equivalence being the extension of the properties of regular distributions to the regularized ones.Comment: 16 page

Rapid simulation of protein motion: merging flexibility, rigidity and normal mode analyses

Protein function frequently involves conformational changes with large amplitude on timescales which are difficult and computationally expensive to access using molecular dynamics. In this paper, we report on the combination of three computationally inexpensive simulation methods-normal mode analysis using the elastic network model, rigidity analysis using the pebble game algorithm, and geometric simulation of protein motion-to explore conformational change along normal mode eigenvectors. Using a combination of ELNEMO and FIRST/FRODA software, large-amplitude motions in proteins with hundreds or thousands of residues can be rapidly explored within minutes using desktop computing resources. We apply the method to a representative set of six proteins covering a range of sizes and structural characteristics and show that the method identifies specific types of motion in each case and determines their amplitude limits.Comment: 34 pages, 22 Figures, Phys. Biol. 9 (2012

Perturbative QCD and factorization of coherent pion photoproduction on the deuteron

We analyze the predictions of perturbative QCD for pion photoproduction on the deuteron, gamma D -> pi^0 D, at large momentum transfer using the reduced amplitude formalism. The cluster decomposition of the deuteron wave function at small binding only allows the nuclear coherent process to proceed if each nucleon absorbs an equal fraction of the overall momentum transfer. Furthermore, each nucleon must scatter while remaining close to its mass shell. Thus the nuclear photoproduction amplitude, M_{gamma D -> pi^0 D}(u,t), factorizes as a product of three factors: (1) the nucleon photoproduction amplitude, M_{gamma N_1 -> pi^0 N_1}(u/4,t/4), at half of the overall momentum transfer, (2) a nucleon form factor, F_{N_2}(t/4), at half the overall momentum transfer, and (3) the reduced deuteron form factor, f_d(t), which according to perturbative QCD, has the same monopole falloff as a meson form factor. A comparison with the recent JLAB data for gamma D -> pi^0 D of Meekins et al. [Phys. Rev. C 60, 052201 (1999)] and the available gamma p -> pi^0 p data shows good agreement between the perturbative QCD prediction and experiment over a large range of momentum transfers and center of mass angles. The reduced amplitude prediction is consistent with the constituent counting rule, p^11_T M_{gamma D -> pi^0 D} -> F(theta_cm), at large momentum transfer. This is found to be consistent with measurements for photon lab energies E_gamma > 3 GeV at theta_cm=90 degrees and \elab > 10 GeV at 136 degrees.Comment: RevTeX 3.1, 17 pages, 6 figures; v2: incorporates minor changes as version accepted by Phys Rev

On the extension of stringlike localised sectors in 2+1 dimensions

In the framework of algebraic quantum field theory, we study the category \Delta_BF^A of stringlike localised representations of a net of observables O \mapsto A(O) in three dimensions. It is shown that compactly localised (DHR) representations give rise to a non-trivial centre of \Delta_BF^A with respect to the braiding. This implies that \Delta_BF^A cannot be modular when non-trival DHR sectors exist. Modular tensor categories, however, are important for topological quantum computing. For this reason, we discuss a method to remove this obstruction to modularity. Indeed, the obstruction can be removed by passing from the observable net A(O) to the Doplicher-Roberts field net F(O). It is then shown that sectors of A can be extended to sectors of the field net that commute with the action of the corresponding symmetry group. Moreover, all such sectors are extensions of sectors of A. Finally, the category \Delta_BF^F of sectors of F is studied by investigating the relation with the categorical crossed product of \Delta_BF^A by the subcategory of DHR representations. Under appropriate conditions, this completely determines the category \Delta_BF^F.Comment: 36 pages, 1 eps figure; v2: appendix added, minor corrections and clarification

Integromic analysis of genetic variation and gene expression identifies networks for cardiovascular disease phenotypes

BACKGROUND - : Cardiovascular disease (CVD) reflects a highly coordinated complex of traits. Although genome-wide association studies have reported numerous single nucleotide polymorphisms (SNPs) to be associated with CVD, the role of most of these variants in disease processes remains unknown. METHODS AND RESULTS - : We built a CVD network using 1512 SNPs associated with 21 CVD traits in genome-wide association studies (at P≤5×10) and cross-linked different traits by virtue of their shared SNP associations. We then explored whole blood gene expression in relation to these SNPs in 5257 participants in the Framingham Heart Study. At a false discovery rate <0.05, we identified 370 cis-expression quantitative trait loci (eQTLs; SNPs associated with altered expression of nearby genes) and 44 trans-eQTLs (SNPs associated with altered expression of remote genes). The eQTL network revealed 13 CVD-related modules. Searching for association of eQTL genes with CVD risk factors (lipids, blood pressure, fasting blood glucose, and body mass index) in the same individuals, we found examples in which the expression of eQTL genes was significantly associated with these CVD phenotypes. In addition, mediation tests suggested that a subset of SNPs previously associated with CVD phenotypes in genome-wide association studies may exert their function by altering expression of eQTL genes (eg, LDLR and PCSK7), which in turn may promote interindividual variation in phenotypes. CONCLUSIONS - : Using a network approach to analyze CVD traits, we identified complex networks of SNP-phenotype and SNP-transcript connections. Integrating the CVD network with phenotypic data, we identified biological pathways that may provide insights into potential drug targets for treatment or prevention of CVD

Precision Primordial 4^4He Measurement with CMB Experiments

Big bang nucleosynthesis (BBN) and the cosmic microwave background (CMB) are two major pillars of cosmology. Standard BBN accurately predicts the primordial light element abundances ($^4$He, D, $^3$He and $^7$Li), depending on one parameter, the baryon density. Light element observations are used as a baryometers. The CMB anisotropies also contain information about the content of the universe which allows an important consistency check on the Big Bang model. In addition CMB observations now have sufficient accuracy to not only determine the total baryon density, but also resolve its principal constituents, H and $^4$He. We present a global analysis of all recent CMB data, with special emphasis on the concordance with BBN theory and light element observations. We find $\Omega_{B}h^{2}=0.025+0.0019-0.0026$ and $Y_{p}=0.250+0.010-0.014$ (fraction of baryon mass as $^4$He) using CMB data alone, in agreement with $^4$He abundance observations. With this concordance established we show that the inclusion of BBN theory priors significantly reduces the volume of parameter space. In this case, we find $\Omega_{B}h^2=0.0244+0.00137-0.00284$ and $Y_p = 0.2493+0.0006-0.001$. We also find that the inclusion of deuterium abundance observations reduces the $Y_p$ and $\Omega_{B}h^2$ ranges by a factor of $\sim$2. Further light element observations and CMB anisotropy experiments will refine this concordance and sharpen BBN and the CMB as tools for precision cosmology.Comment: 7 pages, 3 color figures made minor changes to bring inline with journal versio

Characterization of a Mixed Methanotrophic Culture Capable of Chloroethylene Degradation

A consortium of methanotrophs cultured from the St. Joseph's aquifer in Schoolcraft, MI, was found to exhibit similar methane consumption rates as pure cultures of methanotrophs. The methanotrophic consortium resides within a portion of the aquifer contaminated with a mixed waste plume of perchloroethylene (PCE) and its reductive dechlorination products from natural attenuation, trichloroethylene (TCE), cis-dichloroethylene (c-DCE), and vinyl chloride (VC). Oxidation kinetics for TCE, c-DCE, and VC were measured for the mixed methanotroph consortium and compared to reported rate parameters for degradation of these chloroethylene compounds by pure methanotrophic cultures. The results demonstrate that the kinetics of chloroethylene oxidation by the Schoolcraft methanotroph population mimic the degradation rates of pure methanotrophic cultures that primarily express particulate methane monooxygenase (pMMO). Molecular and biochemical analyses confirmed that sMMO was not being expressed by these cells. Rather, using competitive reverse transcriptionpolymerase chain reaction, pmoA, a gene encoding one of the polypeptides of the pMMO was found at a level of (1.57 ± 0.10) × 10–17 mol pmoA mRNA/g wet soil in soil slurries and (2.65 ± 0.43) × 10–17 mol pmoA mRNA/μl in groundwater. No expression of mmoX, a gene encoding one of the polypeptides of the sMMO, was detected.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/63398/1/ees.2005.22.177.pd

FRW Cosmology From Five Dimensional Vacuum Brans-Dicke Theory

We follow approach of induced matter theory for 5D vacuum BD, introduce induced matter and potential in 4D hypersurfaces, and employ generalized FRW type solution. We confine ourselves to scalar field and scale factors be functions of the time. This makes the induced potential, by its definition, vanishes. When the scale factor of fifth dimension and scalar field are not constants, 5D eqs for any geometry admit a power law relation between scalar field and scale factor of fifth dimension. Hence the procedure exhibits that 5D vacuum FRW like eqs are equivalent, in general, to corresponding 4D vacuum ones with the same spatial scale factor but new scalar field and coupling constant. We show that 5D vacuum FRW like eqs or its equivalent 4D vacuum ones admit accelerated solutions. For constant scalar field, eqs reduce to usual FRW eqs with typical radiation dominated universe. For this situation we obtain dynamics of scale factors for any geometry without any priori assumption. For nonconstant scalar fields and spatially flat geometries, solutions are found to be power law and exponential ones. We also employ weak energy condition for induced matter, that allows negative/positive pressures. All types of solutions fulfill WEC in different ranges. The power law solutions with negative/positive pressures admit both decelerating and accelerating ones. Some solutions accept shrinking extra dimension. By considering nonghost scalar fields and recent observational measurements, solutions are more restricted. We illustrate that accelerating power law solutions, which satisfy WEC and have nonghost fields, are compatible with recent observations in ranges -4/3 < \omega </- -1.3151 and 1.5208 </- n < 1.9583 for dependence of fifth dimension scale factor with usual scale factor. These ranges also fulfill condition nonghost fields in the equivalent 4D vacuum BD eqs.Comment: 18 pages, 16 figures, 11 table

Stein structures and holomorphic mappings

We prove that every continuous map from a Stein manifold X to a complex manifold Y can be made holomorphic by a homotopic deformation of both the map and the Stein structure on X. In the absence of topological obstructions the holomorphic map may be chosen to have pointwise maximal rank. The analogous result holds for any compact Hausdorff family of maps, but it fails in general for a noncompact family. Our main results are actually proved for smooth almost complex source manifolds (X,J) with the correct handlebody structure. The paper contains another proof of Eliashberg's (Int J Math 1:29--46, 1990) homotopy characterization of Stein manifolds and a slightly different explanation of the construction of exotic Stein surfaces due to Gompf (Ann Math 148 (2):619--693, 1998; J Symplectic Geom 3:565--587, 2005). (See also the related preprint math/0509419).Comment: The original publication is available at http://www.springerlink.co