Effects of publication bias on conservation planning

Conservation planning needs reliable information on spatial patterns of biodiversity. However, existing data sets are skewed: some habitats, taxa, and locations are under-represented. Here, we map geographic publication density at the sub-national scale of individual 'provinces'. We query the Web of Science catalogues SCI and SSCI for biodiversity-related publications including country and province names (for the period 1993-2016). We combine these data with other provincial-scale factors hypothesised to affect research (i.e. economic development, human presence, infrastructure and remoteness). We show that sites that appear to be understudied, compared with the biodiversity expected from their bioclimatic conditions, are likely to have been inaccessible to researchers for a diversity of reasons amongst which current or recent armed conflicts are notable. Finally, we create a priority list of provinces where geographic publication bias is of most concern, and discuss how our provincial-scale model can assist in adjusting for publication biases in conservation planning.Comment: 10 pages; 3 figures; 1 table;R code on https://github.com/raffael-hickisch; data at https://zenodo.org/record/998889; interactive at http://bit.ly/publication_density_ma

Selective Analysis of Redox Processes at the Electrode Interface with Time-Resolved Raman Spectroscopy

Electrochemistry and electrochemical reactions are increasingly important in the transition to a sustainable chemical industry. The electron transfer that drives such reactions takes place within nanometers of the electrode surface, and follow-up chemical reactions take place within the diffusion layer. Hence, understanding electrochemical reactions requires time-, potential-, and spatially resolved analysis. The confocal nature of Raman spectroscopy provides high spatial resolution, in addition to detailed information on molecular structure. The intrinsic weakness of nonresonant Raman scattering, however, is not sensitive enough for relatively minor changes to the solution resulting from reactions at the electrode interface. Indeed, the limit of detection is typically well above the concentrations used in electrochemical studies. Here, we show that surface-enhanced Raman scattering (SERS) and resonance Raman (rR) spectroscopy allow for spatially and time-resolved analysis of solution composition at (&lt;1-2 nm) and near (within 5 μm) the electrode surface, respectively, in a selective manner for species present at low (&lt;1 mM) concentrations. We show changes in concentration of species at the electrode surface, without the need for labels, specific adsorption, or resonance enhancement, using a SERS-active gold electrode prepared readily by electrochemical surface roughening. A combination of smooth and roughened gold electrodes is used to distinguish between surface and resonance enhancement using the well-known redox couples ferrocene and 2,2’-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS). We discuss the impact of specific adsorption on the spectral analysis with the ruthenium(II) polypyridyl complex, [Ru(bpy)3]2+. The dual function of the electrode (surface enhancement and electron transfer) in the analysis of solution processes is demonstrated with the reversible oxidation of TMA (4,N,N-trimethylaniline), where transient soluble species are identified in real time, with rapid spectral acquisition, making use of localized enhancement. We anticipate that this approach will find use in elucidating electro(catalytic) reactions at electrode interfaces.</p

Distorted Copulas: Constructions and Tail Dependence

Given a copula C, we examine under which conditions on an order isomorphism ψ of [0, 1] the distortion C ψ: [0, 1]2 → [0, 1], C ψ(x, y) = ψ{C[ψ−1(x), ψ−1(y)]} is again a copula. In particular, when the copula C is totally positive of order 2, we give a sufficient condition on ψ that ensures that any distortion of C by means of ψ is again a copula. The presented results allow us to introduce in a more flexible way families of copulas exhibiting different behavior in the tails

Strain localization and percolation of stable structure in amorphous solids

Spontaneous strain localization occurs during mechanical tests of a model amorphous solid simulated using molecular dynamics. The degree of localization depends upon the extent of structural relaxation prior to mechanical testing. In the most rapidly quenched samples higher strain rates lead to increased localization, while the more gradually quenched samples exhibit the opposite strain rate dependence. This transition coincides with the k-core percolation of atoms with quasi-crystal-like short range order. The authors infer the existence of a related microstructural length scale.Comment: 4 pages, 4 figure

Single wavelength colour tuning of spiropyran and dithienylethene based photochromic coatings

Controlling the transmission of thin films with external stimuli is an important goal in functional optical materials and devices. Tuning is especially challenging where both broad band (neutral density filtering) and spectrally varied (colour) transmission are required. The external control provided by photochemically driven switching, between transmission levels and colours, is functionally simple from a device perspective. The limits due to the spectral ranges of individual photochromic compounds can be overcome by combining several photochromes within one material or device. Here we show that a combination of photochromic molecular switches immobilised in a PMMA polymer matrix enables tuning of colour and transparency. We show that only a single excitation wavelength is required through the use of the primary inner filter effect and the layered construction of the films in which the photochromes nitrospiropyran (NSP), and nitrothiospiropyran (TSP) or 1,2-bis-terthienyl-hexafluorocyclopentene (DTE) are separated spatially. The approach taken circumvents the need to match photochemical quantum yields and thermal reactivity of the component photochromes. The photochemical switching of the films was characterised by UV/vis absorption spectroscopy and shows that switching rates and photostationary states are limited by inner filter effects rather than the intrinsic properties of photochromes, such as photochemical quantum yields and thermal stability. The photochemical behaviour and stability of the photochromes in solution and in the PMMA films were compared and the concentration range over which self-inhibition of photochemical switching occurs was established. The rate of photochemical switching and the difference in transmission between the spiropyran and merocyanine forms in solution enable prediction of the performance in the films and enable rational design of colour tuning ranges and responsivity in thin film filters

Photometric identification of blue horizontal branch stars

We investigate the performance of some common machine learning techniques in identifying BHB stars from photometric data. To train the machine learning algorithms, we use previously published spectroscopic identifications of BHB stars from SDSS data. We investigate the performance of three different techniques, namely k nearest neighbour classification, kernel density estimation and a support vector machine (SVM). We discuss the performance of the methods in terms of both completeness and contamination. We discuss the prospect of trading off these values, achieving lower contamination at the expense of lower completeness, by adjusting probability thresholds for the classification. We also discuss the role of prior probabilities in the classification performance, and we assess via simulations the reliability of the dataset used for training. Overall it seems that no-prior gives the best completeness, but adopting a prior lowers the contamination. We find that the SVM generally delivers the lowest contamination for a given level of completeness, and so is our method of choice. Finally, we classify a large sample of SDSS DR7 photometry using the SVM trained on the spectroscopic sample. We identify 27,074 probable BHB stars out of a sample of 294,652 stars. We derive photometric parallaxes and demonstrate that our results are reasonable by comparing to known distances for a selection of globular clusters. We attach our classifications, including probabilities, as an electronic table, so that they can be used either directly as a BHB star catalogue, or as priors to a spectroscopic or other classification method. We also provide our final models so that they can be directly applied to new data.Comment: To appear in A&A. 19 pages, 22 figures. Tables 7, A3 and A4 available electronically onlin

Associative polynomial functions over bounded distributive lattices

The associativity property, usually defined for binary functions, can be generalized to functions of a given fixed arity n>=1 as well as to functions of multiple arities. In this paper, we investigate these two generalizations in the case of polynomial functions over bounded distributive lattices and present explicit descriptions of the corresponding associative functions. We also show that, in this case, both generalizations of associativity are essentially the same.Comment: Final versio

Analysis of Peculiarities of the Stellar Velocity Field in the Solar Neighborhood

Based on a new version of the Hipparcos catalogue and an updated Geneva-Copenhagen survey of F and G dwarfs, we analyze the space velocity field of about 17000 single stars in the solar neighborhood. The main known clumps, streams, and branches (Pleiades, Hyades, Sirius, Coma Berenices, Hercules, Wolf 630-alpha Ceti, and Arcturus) have been identified using various approaches. The evolution of the space velocity field for F and G dwarfs has been traced as a function of the stellar age. We have managed to confirm the existence of the recently discovered KFR08 stream. We have found 19 Hipparcos stars, candidates for membership in the KFR08 stream, and obtained an isochrone age estimate for the stream, 13 Gyr. The mean stellar ages of the Wolf 630-alpha Ceti and Hercules streams are shown to be comparable, 4--6 Gyr. No significant differences in the metallicities of stars belonging to these streams have been found. This is an argument for the hypothesis that these streams owe their origin to a common mechanism.Comment: 23 pages, 9 figure

Electrically Tunable Excitonic Light Emitting Diodes based on Monolayer WSe2 p-n Junctions

Light-emitting diodes are of importance for lighting, displays, optical interconnects, logic and sensors. Hence the development of new systems that allow improvements in their efficiency, spectral properties, compactness and integrability could have significant ramifications. Monolayer transition metal dichalcogenides have recently emerged as interesting candidates for optoelectronic applications due to their unique optical properties. Electroluminescence has already been observed from monolayer MoS2 devices. However, the electroluminescence efficiency was low and the linewidth broad due both to the poor optical quality of MoS2 and to ineffective contacts. Here, we report electroluminescence from lateral p-n junctions in monolayer WSe2 induced electrostatically using a thin boron nitride support as a dielectric layer with multiple metal gates beneath. This structure allows effective injection of electrons and holes, and combined with the high optical quality of WSe2 it yields bright electroluminescence with 1000 times smaller injection current and 10 times smaller linewidth than in MoS2. Furthermore, by increasing the injection bias we can tune the electroluminescence between regimes of impurity-bound, charged, and neutral excitons. This system has the required ingredients for new kinds of optoelectronic devices such as spin- and valley-polarized light-emitting diodes, on-chip lasers, and two-dimensional electro-optic modulators.Comment: 13 pages main text with 4 figures + 4 pages upplemental material

Backward multiplex coherent anti-Stokes Raman (CARS) spectroscopic imaging with electron-multiplying CCD (EM-CCD) camera

A multiplex CARS imaging system, equipped with an EM-CCD camera, was developed to improve the sensitivity of backward CARS imaging in biological analysis using an inverted microscope. The signal-to-noise ratio was improved by a factor of ca. 3 compared to a conventional CCD mode through the use of EM gain. When imaging epithelial cells in the backward CARS configuration, intracellular organelles such as lipid droplets and nuclei were spectroscopically identified with an exposure time of only 100 ms/pixel.</p