The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster.

Despite decades of work, our understanding of the distribution of fitness effects of segregating genetic variants in natural populations remains largely incomplete. One form of selection that can maintain genetic variation is spatially varying selection, such as that leading to latitudinal clines. While the introduction of population genomic approaches to understanding spatially varying selection has generated much excitement, little successful effort has been devoted to moving beyond genome scans for selection to experimental analysis of the relevant biology and the development of experimentally motivated hypotheses regarding the agents of selection; it remains an interesting question as to whether the vast majority of population genomic work will lead to satisfying biological insights. Here, motivated by population genomic results, we investigate how spatially varying selection in the genetic model system, Drosophila melanogaster, has led to genetic differences between populations in several components of the DNA damage response. UVB incidence, which is negatively correlated with latitude, is an important agent of DNA damage. We show that sensitivity of early embryos to UVB exposure is strongly correlated with latitude such that low latitude populations show much lower sensitivity to UVB. We then show that lines with lower embryo UVB sensitivity also exhibit increased capacity for repair of damaged sperm DNA by the oocyte. A comparison of the early embryo transcriptome in high and low latitude embryos provides evidence that one mechanism of adaptive DNA repair differences between populations is the greater abundance of DNA repair transcripts in the eggs of low latitude females. Finally, we use population genomic comparisons of high and low latitude samples to reveal evidence that multiple components of the DNA damage response and both coding and non-coding variation likely contribute to adaptive differences in DNA repair between populations

Multiplicity Distributions in Canonical and Microcanonical Statistical Ensembles

The aim of this paper is to introduce a new technique for calculation of observables, in particular multiplicity distributions, in various statistical ensembles at finite volume. The method is based on Fourier analysis of the grand canonical partition function. Taylor expansion of the generating function is used to separate contributions to the partition function in their power in volume. We employ Laplace's asymptotic expansion to show that any equilibrium distribution of multiplicity, charge, energy, etc. tends to a multivariate normal distribution in the thermodynamic limit. Gram-Charlier expansion allows additionally for calculation of finite volume corrections. Analytical formulas are presented for inclusion of resonance decay and finite acceptance effects directly into the system partition function. This paper consolidates and extends previously published results of current investigation into properties of statistical ensembles.Comment: 53 pages, 7 figure

Particle Number Fluctuations in Canonical Ensemble

Fluctuations of charged particle number are studied in the canonical ensemble. In the infinite volume limit the fluctuations in the canonical ensemble are different from the fluctuations in the grand canonical one. Thus, the well-known equivalence of both ensembles for the average quantities does not extend for the fluctuations. In view of a possible relevance of the results for the analysis of fluctuations in nuclear collisions at high energies, a role of the limited kinematical acceptance is studied.Comment: 13 pages, 9 figures, LaTe

Multiplicity fluctuations in relativistic nuclear collisions

Multiplicity distributions of hadrons produced in central nucleus-nucleus collisions are studied within the hadron-resonance gas model in the large volume limit. In the canonical ensemble conservation of three charges (baryon number, electric charge, and strangeness) is enforced. In addition, in the micro-canonical ensemble energy conservation is included. An analytical method is used to account for resonance decays. Multiplicity distributions and scaled variances for negatively charged hadrons are presented along the chemical freeze-out line of central Pb+Pb (Au+Au) collisions from SIS to LHC energies. Predictions obtained within different statistical ensembles are compared with preliminary NA49 experimental results on central Pb+Pb collisions in the SPS energy range. The measured fluctuations are significantly narrower than a Poisson reference distribution, and clearly favor expectations for the micro-canonical ensemble.Comment: 6 pages, 3 figure

Pion Number Fluctuations and Correlations in the Statistical System with Fixed Isospin

The statistical system of pions with zero total isospin is studied. The suppression effects for the average yields due to isospin conservation are the same for $\pi^0$, $\pi^+$ and $\pi^-$. However, a behavior of the corresponding particle number fluctuations are different. For neutral pions there is the enhancement of the fluctuations, whereas for charged pions the isospin conservation suppresses fluctuations. The correlations between the numbers of charged and neutral pions are observed for finite systems. This causes a maximum of the total pion number fluctuations for small systems. The thermodynamic limit values for the scaled variances of neutral and charged pions are calculated. The enhancements of the fluctuations due to Bose statistics are found and discussed

Particle Number Fluctuations in Statistical Model with Exact Charge Conservation Laws

Even though the first momenta i.e. the ensemble average quantities in canonical ensemble (CE) give the grand canonical (GC) results in large multiplicity limit, the fluctuations involving second moments do not respect this asymptotic behaviour. Instead, the asymptotics are strikingly different, giving a new handle in study of statistical particle number fluctuations in relativistic nuclear reactions. Here we study the analytical large volume asymptotics to general case of multispecies hadron gas carrying fixed baryon number, strangeness and electric charge. By means of Monte Carlo simulations we have also studied the general multiplicity probability distributions taking into account the decay chains of resonance states.Comment: 4 pages, 2 figures. The report of the talk given in Strangeness in Quark Matter 2004, Cape Town. Submitted to J. Phys. G: Nucl. Part. Phy

Multiplicity Fluctuations in the Pion-Fireball Gas

The pion number fluctuations are considered in the system of pions and large mass fireballs decaying finally into pions. A formulation which gives an extension of the model of independent sources is suggested. The grand canonical and micro-canonical ensemble formulations of the pion-fireball gas are considered as particular examples.Comment: 13 pages, 4 figure

Rampant Adaptive Evolution in Regions of Proteins with Unknown Function in Drosophila simulans

Adaptive protein evolution is pervasive in Drosophila. Genomic studies, thus far, have analyzed each protein as a single entity. However, the targets of adaptive events may be localized to particular parts of proteins, such as protein domains or regions involved in protein folding. We compared the population genetic mechanisms driving sequence polymorphism and divergence in defined protein domains and non-domain regions. Interestingly, we find that non-domain regions of proteins are more frequent targets of directional selection. Protein domains are also evolving under directional selection, but appear to be under stronger purifying selection than non-domain regions. Non-domain regions of proteins clearly play a major role in adaptive protein evolution on a genomic scale and merit future investigations of their functional properties

Strongly Intensive Measures for Multiplicity Fluctuations

The recently proposed two families of strongly intensive measures of fluctuations and correlations are studied within Hadron-String-Dynamics (HSD) transport approach to nucleus-nucleus collisions. We consider the measures $\Delta^{K\pi}$ and $\Sigma^{K\pi}$ for kaon and pion multiplicities in Au+Au collisions in a wide range of collision energies and centralities. These strongly intensive measures appear to cancel the participant number fluctuations. This allows to enlarge the centrality window in the analysis of event-by-event fluctuations up to at least of 10% most central collisions. We also present a comparison of the HSD results with the data of NA49 and STAR collaborations. The HSD describes $\Sigma^{K\pi}$ reasonably well. However, the HSD results depend monotonously on collision energy and do not reproduce the bump-deep structure of $\Delta^{K\pi}$ observed from the NA49 data in the region of the center of mass energy of nucleon pair $\sqrt{s_{NN}}= 8\div 12$ GeV. This fact deserves further studies. The origin of this `structure' is not connected with simple geometrical or limited acceptance effects, as these effects are taken into account in the HSD simulations