2,337 research outputs found
Coherent motion of stereocilia assures the concerted gating of hair-cell transduction channels
The hair cell's mechanoreceptive organelle, the hair bundle, is highly
sensitive because its transduction channels open over a very narrow range of
displacements. The synchronous gating of transduction channels also underlies
the active hair-bundle motility that amplifies and tunes responsiveness. The
extent to which the gating of independent transduction channels is coordinated
depends on how tightly individual stereocilia are constrained to move as a
unit. Using dual-beam interferometry in the bullfrog's sacculus, we found that
thermal movements of stereocilia located as far apart as a bundle's opposite
edges display high coherence and negligible phase lag. Because the mechanical
degrees of freedom of stereocilia are strongly constrained, a force applied
anywhere in the hair bundle deflects the structure as a unit. This feature
assures the concerted gating of transduction channels that maximizes the
sensitivity of mechanoelectrical transduction and enhances the hair bundle's
capacity to amplify its inputs.Comment: 24 pages, including 6 figures, published in 200
Bounded H_\infty-calculus for pseudodifferential Douglis-Nirenberg systems of mild regularity
Parameter-ellipticity with respect to a closed subsector of the complex plane
for pseudodifferential Douglis-Nirenberg systems is discussed and shown to
imply the existence of a bounded H_\infty-calculus in suitable scales of
Sobolev, Besov, and Hoelder spaces. We also admit non pseudodifferential
perturbations. Applications concern systems with coefficients of mild Hoelder
regularity and the generalized thermoelastic plate equations.Comment: 22 page
Single-protein detection in crowded molecular environments in cryo-EM images
We present an approach to study macromolecular assemblies by detecting component proteins' characteristic high-resolution projection patterns, calculated from their known 3D structures, in single electron cryo-micrographs. Our method detects single apoferritin molecules in vitreous ice with high specificity and determines their orientation and location precisely. Simulations show that high spatial-frequency information and in the presence of protein background a whitening filter are essential for optimal detection, in particular for images taken far from focus. Experimentally, we could detect small viral RNA polymerase molecules, distributed randomly among binding locations, inside rotavirus particles. Based on the currently attainable image quality, we estimate a threshold for detection that is 150 kDa in ice and 300 kDa in 100 nm thick samples of dense biological material
Applications of Information Theory to Analysis of Neural Data
Information theory is a practical and theoretical framework developed for the
study of communication over noisy channels. Its probabilistic basis and
capacity to relate statistical structure to function make it ideally suited for
studying information flow in the nervous system. It has a number of useful
properties: it is a general measure sensitive to any relationship, not only
linear effects; it has meaningful units which in many cases allow direct
comparison between different experiments; and it can be used to study how much
information can be gained by observing neural responses in single trials,
rather than in averages over multiple trials. A variety of information
theoretic quantities are commonly used in neuroscience - (see entry
"Definitions of Information-Theoretic Quantities"). In this entry we review
some applications of information theory in neuroscience to study encoding of
information in both single neurons and neuronal populations.Comment: 8 pages, 2 figure
MinE conformational switching confers robustness on self-organized Min protein patterns
Protein patterning is vital for many fundamental cellular processes. This raises two intriguing questions: Can such intrinsically complex processes be reduced to certain core principles and, if so, what roles do the molecular details play in individual systems? A prototypical example for protein patterning is the bacterial Min system, in which self-organized pole-to-pole oscillations of MinCDE proteins guide the cell division machinery to midcell. These oscillations are based on cycling of the ATPase MinD and its activating protein MinE between the membrane and the cytoplasm. Recent biochemical evidence suggests that MinE undergoes a reversible, MinD-dependent conformational switch from a latent to a reactive state. However, the functional relevance of this switch for the Min network and pattern formation remains unclear. By combining mathematical modeling and in vitro reconstitution of mutant proteins, we dissect the two aspects of MinE's switch, persistent membrane binding and a change in MinE's affinity for MinD. Our study shows that the MinD-dependent change in MinE's binding affinity for MinD is essential for patterns to emerge over a broad and physiological range of protein concentrations. Mechanistically, our results suggest that conformational switching of an ATPase-activating protein can lead to the spatial separation of its distinct functional states and thereby confer robustness on an intracellular protein network with vital roles in bacterial cell division
Trends Parasitol
In December 2013, chikungunya virus (CHIKV) transmission was reported for the first time in the Americas. Since then it has spread quickly, with more than 1 million suspected and confirmed cases being reported in one year, where previously there were only sporadic travel-related cases. Transmission patterns suggest that the epidemic in the southern hemisphere is only beginning and that chikungunya will not go away anytime soon.CC999999/Intramural CDC HHS/United States2016-02-01T00:00:00Z25649340PMC458306
In-vivo data support equivalent therapeutic efficacy of a new tobramycin inhalation solution (150 mg/1.5 ml) administered by the eFlow® electronic nebuliser compared to TOBI® in the PARI LC PLUS®
Hyperbaric tracheobronchial compression in cetaceans and pinnipeds
Author Posting. © Company of Biologists, 2020. This article is posted here by permission of Company of Biologists for personal use, not for redistribution. The definitive version was published in Journal of Experimental Biology 223 (2020): jeb217885, doi:10.1242/jeb.217885.Assessment of the compressibility of marine mammal airways at depth is crucial to understanding vital physiological processes such as gas exchange during diving. Very few studies have directly assessed changes in cetacean and pinniped tracheobronchial shape, and none have quantified changes in volume with increasing pressure. A harbor seal, gray seal, harp seal, harbor porpoise and common dolphin were imaged promptly post mortem via computed tomography in a radiolucent hyperbaric chamber. Volume reconstructions were performed of segments of the trachea and bronchi of the pinnipeds and bronchi of the cetaceans for each pressure treatment. All specimens examined demonstrated significant decreases in airway volume with increasing pressure, with those of the harbor seal and common dolphin nearing complete collapse at the highest pressures. The common dolphin bronchi demonstrated distinctly different compression dynamics between 50% and 100% lung inflation treatments, indicating the importance of air in maintaining patent airways, and collapse occurred caudally to cranially in the 50% treatment. Dynamics of the harbor seal and gray seal airways indicated that the trachea was less compliant than the bronchi. These findings indicate potential species-specific variability in airway compliance, and cessation of gas exchange may occur at greater depths than those predicted in models assuming rigid airways. This may potentially increase the likelihood of decompression sickness in these animals during diving.This research received no specific grant from any funding agency in the public, commercial or not-for-profit sectors.2021-02-1
Characterization of Turing diffusion-driven instability on evolving domains
In this paper we establish a general theoretical framework for Turing diffusion-driven instability for reaction-diffusion systems on time-dependent evolving domains. The main result is that Turing diffusion-driven instability for reaction-diffusion systems on evolving domains is characterised by Lyapunov exponents of the evolution family associated with the linearised system (obtained by linearising the original system along a spatially independent solution). This framework allows for the inclusion of the analysis of the long-time behavior of the solutions of reaction-diffusion systems. Applications to two special types of evolving domains are considered: (i) time-dependent domains which evolve to a final limiting fixed domain and (ii) time-dependent domains which are eventually time periodic. Reaction-diffusion systems have been widely proposed as plausible mechanisms for pattern formation in morphogenesis
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