Three Mechanisms for Bar Thickening

We present simulations of bar-unstable stellar discs in which the bars thicken into box/peanut shapes. Detailed analysis of the evolution of each model revealed three different mechanisms for thickening the bars. The first mechanism is the well-known buckling instability, the second is the vertical excitation of bar orbits by passage through the 2:1 vertical resonance, and the third is a gradually increasing fraction of bar orbits trapped into this resonance. Since bars in many galaxies may have formed and thickened long ago, we have examined the models for fossil evidence in the velocity distribution of stars in the bar, finding a diagnostic to discriminate between a bar that had buckled from the other two mechanisms.Comment: 18 pages, 17 figures, accepted to appear in MNRAS, comments welcom

Microscopic basis for pattern formation and anomalous transport in two-dimensional active gels

Active gels are a class of biologically-relevant material containing embedded agents that spontaneously generate forces acting on a sparse filament network. In vitro experiments of protein filaments and molecular motors have revealed a range of non- equilibrium pattern formation resulting from motor motion along filament tracks, and there are a number of hydrodynamic models purporting to describe such systems. Here we present results of extensive simulations designed to elucidate the microscopic basis underpinning macroscopic flow in active gels. Our numerical scheme includes thermal fluctuations in filament positions, excluded volume interactions, and filament elasticity in the form of bending and stretching modes. Motors are represented individually as bipolar springs governed by rate-based rules for attachment, detachment and unidirectional motion of motor heads along the filament contour. We systematically vary motor density and speed, and uncover parameter regions corresponding to unusual statics and dynamics which overlap but do not coincide. The anomalous statics arise at high motor densities and take the form of end-bound localized filament bundles for rapid motors, and extended clusters exhibiting enhanced small-wavenumber density fluctuations and power-law cluster-size distributions for slow, processive motors. Anomalous dynamics arise for slow, processive motors over a range of motor densities, and are most evident as superdiffusive mass transport, which we argue is the consequence of a form of effective self-propulsion resulting from the polar coupling between motors and filaments.Comment: 14 pages, 17 figures. Minor clarifications and updated/additional references. To appear in Soft Matte

Modeling and experimental investigations of the stress-softening behavior of soft collagenous tissues

This paper deals with the formulation of a micro-mechanically based dam-age model for soft collagenous tissues. The model is motivated by (i) a sliding filament model proposed in the literature [1] and (ii) by experimental observations from electron microscopy (EM) images of human abdominal aorta specimens, see [2]. Specifically, we derive a continuum damage model that takes into account statistically distributed pro- teoglycan (PG) bridges. The damage model is embedded into the constitutive framework proposed by Balzani et al. [3] and adjusted to cyclic uniaxial tension tests of a hu- man carotid artery. Furthermore, the resulting damage distribution of the model after a circumferential overstretch of a simplified arterial section is analyzed in a finite element calculation

Binary spinning black hole Hamiltonian in canonical center-of-mass and rest-frame coordinates through higher post-Newtonian order

The recently constructed Hamiltonians for spinless binary black holes through third post-Newtonian order and for spinning ones through formal second post-Newtonian order, where the spins are counted of zero post-Newtonian order, are transformed into fully canonical center-of-mass and rest-frame variables. The mixture terms in the Hamiltonians between center-of-mass and rest-frame variables are in accordance with the relation between the total linear momentum and the center-of-mass velocity as demanded by global Lorentz invariance. The various generating functions for the center-of-mass and rest-frame canonical variables are explicitly given in terms of the single-particle canonical variables. The no-interaction theorem does not apply because the world-line condition of Lorentz covariant position variables is not imposed.Comment: 18 pages, no figure

Reply to the Comment on `Deterministic Single-Photon Source for Distributed Quantum Networking'

Reply to the comment of H. J. Kimble [quant-ph/0210032] on the experiment realizing a "deterministic single-photon source for distributed quantum networking" by Kuhn, Hennrich, and Rempe [Phys. Rev. Lett. 89, 067901 (2002), quant-ph/0204147].Comment: 1 page 1 figur

Dynamic treatment of vibrational energy relaxation in a heterogeneous and fluctuating environment

A computational approach to describe the energy relaxation of a high-frequency vibrational mode in a fluctuating heterogeneous environment is outlined. Extending previous work [H. Fujisaki, Y. Zhang, and J.E. Straub, J. Chem. Phys. {\bf 124}, 144910 (2006)], second-order time-dependent perturbation theory is employed which includes the fluctuations of the parameters in the Hamiltonian within the vibrational adiabatic approximation. This means that the time-dependent vibrational frequencies along an MD trajectory are obtained via a partial geometry optimization of the solute with fixed solvent and a subsequent normal mode calculation. Adopting the amide I mode of N-methylacetamide in heavy water as a test problem, it is shown that the inclusion of dynamic fluctuations may significantly change the vibrational energy relaxation. In particular, it is found that relaxation occurs in two phases, because for short times ($\lesssim$ 200 fs) the spectral density appears continuous due to the frequency-time uncertainty relation, while at longer times the discrete nature of the bath becomes apparent. Considering the excellent agreement between theory and experiment, it is speculated if this behavior can explain the experimentally obtained biphasic relaxation the amide I mode of N-methylacetamide.Comment: 24 pages, 7 figures, submitted to J. Chem. Phy

Exact and Fast Numerical Algorithms for the Stochastic Wave Equation

On the basis of integral representations we propose fast numerical methods to solve the Cauchy problem for the stochastic wave equation without boundaries and with the Dirichlet boundary conditions. The algorithms are exact in a probabilistic sense

From algebra to logic: there and back again -- the story of a hierarchy

This is an extended survey of the results concerning a hierarchy of languages that is tightly connected with the quantifier alternation hierarchy within the two-variable fragment of first order logic of the linear order.Comment: Developments in Language Theory 2014, Ekaterinburg : Russian Federation (2014

The Destruction of Bars by Central Mass Concentrations

More than two thirds of disk galaxies are barred to some degree. Many today harbor massive concentrations of gas in their centers, and some are known to possess supermassive black holes (SMBHs) and their associated stellar cusps. Previous theoretical work has suggested that a bar in a galaxy could be dissolved by the formation of a mass concentration in the center, although the precise mass and degree of central concentration required is not well-established. We report an extensive study of the effects of central masses on bars in high-quality N-body simulations of galaxies. We have varied the growth rate of the central mass, its final mass and degree of concentration to examine how these factors affect the evolution of the bar. Our main conclusions are: (1) Bars are more robust than previously thought. The central mass has to be as large as several percent of the disk mass to completely destroy the bar on a short timescale. (2) For a given mass, dense objects cause the greatest reduction in bar amplitude, while significantly more diffuse objects have a lesser effect. (3) The bar amplitude always decreases as the central mass is grown, and continues to decay thereafter on a cosmological time-scale. (4) The first phase of bar-weakening is due to the destruction by the CMC of lower-energy, bar-supporting orbits, while the second phase is a consequence of secular changes to the global potential which further diminish the number of bar-supporting orbits. We provide detailed phase-space and orbit analysis to support this suggestion. Thus current masses of SMBHs are probably too small, even when dressed with a stellar cusp, to affect the bar in their host galaxies. The molecular gas concentrations found in some barred galaxies are also too diffuse to affect the amplitude of the bar significantly.Comment: AASTeX v5.0 preprint; 44 pages, including 1 table and 16 figures. To appear in ApJ. High resolution version can be found at http://www.physics.rutgers.edu/~shen/bar_destruct/paper_high_res.pd