Warming Overcomes Dispersal-Limitation to Promote Non-native Expansion in Lake Baikal

Non-native species and climate change pose serious threats to global biodiversity. However, the roles of climate, dispersal, and competition are difficult to disentangle in heterogeneous landscapes. We combine empirical data and theory to examine how these forces influence the spread of non-native species in Lake Baikal. We analyze the potential for Daphnia longispina to establish in Lake Baikal, potentially threatening an endemic, cryophillic copepod Epischurella baikalensis. We collected field samples to establish current community composition and compared them to model predictions informed by flow rates, present-day temperatures, and temperature projections. Our data and model agree that expansion is currently limited by dispersal. However, projected increases in temperature reverse this effect, allowing D. longispina to establish in Lake Baikal’s main basin. A strong negative impact emerges from the interaction between climate change and dispersal, outweighing their independent effects. Climate, dispersal, and competition have complex, interactive effects on expansion with important implications for global biodiversity

Chirped pulse Raman amplification in warm plasma: towards controlling saturation

Stimulated Raman backscattering in plasma is potentially an efficient method of amplifying laser pulses to reach exawatt powers because plasma is fully broken down and withstands extremely high electric fields. Plasma also has unique nonlinear optical properties that allow simultaneous compression of optical pulses to ultra-short durations. However, current measured efficiencies are limited to several percent. Here we investigate Raman amplification of short duration seed pulses with different chirp rates using a chirped pump pulse in a preformed plasma waveguide. We identify electron trapping and wavebreaking as the main saturation mechanisms, which lead to spectral broadening and gain saturation when the seed reaches several millijoules for durations of 10's - 100's fs for 250 ps, 800 nm chirped pump pulses. We show that this prevents access to the nonlinear regime and limits the efficiency, and interpret the experimental results using slowly-varying-amplitude, current-averaged particle-in-cell simulations. We also propose methods for achieving higher efficiencies.close0

On the Hyperbolicity of Lorenz Renormalization

We consider infinitely renormalizable Lorenz maps with real critical exponent $\alpha>1$ and combinatorial type which is monotone and satisfies a long return condition. For these combinatorial types we prove the existence of periodic points of the renormalization operator, and that each map in the limit set of renormalization has an associated unstable manifold. An unstable manifold defines a family of Lorenz maps and we prove that each infinitely renormalizable combinatorial type (satisfying the above conditions) has a unique representative within such a family. We also prove that each infinitely renormalizable map has no wandering intervals and that the closure of the forward orbits of its critical values is a Cantor attractor of measure zero.Comment: 63 pages; 10 figure

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia

BACKGROUND: Gene expression regulation is one of the fundamental mechanisms of phenotypic plasticity and is expected to respond to selection in conditions favoring phenotypic response. The observation that many organisms increase their stress tolerance after acclimation to moderate levels of stress is an example of plasticity which has been long hypothesized to be based on adaptive changes in gene expression. We report genome-wide patterns of gene expression in two heat-tolerant and two heat-sensitive parthenogenetic clones of the zooplankton crustacean Daphnia pulex exposed for three generations to either optimal (18°C) or substressful (28°C) temperature. RESULTS: A large number of genes responded to temperature and many demonstrated a significant genotype-by-environment (GxE) interaction. Among genes with a significant GxE there were approximately equally frequent instances of canalization, i.e. stronger plasticity in heat-sensitive than in heat-tolerant clones, and of enhancement of plasticity along the evolutionary vector toward heat tolerance. The strongest response observed is the across-the-board down-regulation of a variety of genes occurring in heat-tolerant, but not in heat-sensitive clones. This response is particularly obvious among genes involved in core metabolic pathways and those responsible for transcription, translation and DNA repair. CONCLUSIONS: The observed down-regulation of metabolism, consistent with previous findings in yeast and Drosophila, may reflect a general compensatory stress response. The associated down-regulation of DNA repair pathways potentially creates a trade-off between short-term benefits of survival at high temperature and long-term costs of accelerated mutation accumulation. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/1471-2164-15-859) contains supplementary material, which is available to authorized users

Functional Genomics of Acclimation and Adaptation in Response to Thermal Stress in Daphnia

Background: Gene expression regulation is one of the fundamental mechanisms of phenotypic plasticity and is expected to respond to selection in conditions favoring phenotypic response. The observation that many organisms increase their stress tolerance after acclimation to moderate levels of stress is an example of plasticity which has been long hypothesized to be based on adaptive changes in gene expression. We report genome-wide patterns of gene expression in two heat-tolerant and two heat-sensitive parthenogenetic clones of the zooplankton crustacean Daphnia pulex exposed for three generations to either optimal (18°C) or substressful (28°C) temperature. Results: A large number of genes responded to temperature and many demonstrated a significant genotype-byenvironment (GxE) interaction. Among genes with a significant GxE there were approximately equally frequent instances of canalization, i.e. stronger plasticity in heat-sensitive than in heat-tolerant clones, and of enhancement of plasticity along the evolutionary vector toward heat tolerance. The strongest response observed is the across-the-board down-regulation of a variety of genes occurring in heat-tolerant, but not in heat-sensitive clones. This response is particularly obvious among genes involved in core metabolic pathways and those responsible for transcription, translation and DNA repair. Conclusions: The observed down-regulation of metabolism, consistent with previous findings in yeast and Drosophila, may reflect a general compensatory stress response. The associated down-regulation of DNA repair pathways potentially creates a trade-off between short-term benefits of survival at high temperature and long-term costs of accelerated mutation accumulation

Dynamics of the Universal Area-Preserving Map Associated with Period Doubling: Hyperbolic Sets

It is known that the famous Feigenbaum-Coullet-Tresser period doubling universality has a counterpart for area-preserving maps of {\fR}^2. A renormalization approach has been used in \cite{EKW1} and \cite{EKW2} in a computer-assisted proof of existence of a "universal" area-preserving map $F_*$ -- a map with orbits of all binary periods 2^k, k \in \fN. In this paper, we consider maps in some neighbourhood of $F_*$ and study their dynamics. We first demonstrate that the map $F_*$ admits a "bi-infinite heteroclinic tangle": a sequence of periodic points $\{z_k\}$, k \in \fZ, |z_k| \converge{{k \to \infty}} 0, \quad |z_k| \converge{{k \to -\infty}} \infty, whose stable and unstable manifolds intersect transversally; and, for any N \in \fN, a compact invariant set on which $F_*$ is homeomorphic to a topological Markov chain on the space of all two-sided sequences composed of $N$ symbols. A corollary of these results is the existence of {\it unbounded} and {\it oscillating} orbits. We also show that the third iterate for all maps close to $F_*$ admits a horseshoe. We use distortion tools to provide rigorous bounds on the Hausdorff dimension of the associated locally maximal invariant hyperbolic set: $$ 0.7673 \ge {\rm dim}_H(\cC_F) \ge \varepsilon \approx 0.00044 e^{-1797}.$

Modeling the variability of shapes of a human placenta

While it is well-understood what a normal human placenta should look like, a deviation from the norm can take many possible shapes. In this paper we propose a mechanism for this variability based on the change in the structure of the vascular tree

Centrality of the Umbilical Cord Insertion in a Human Placenta Influences the Placental Efficiency☆

We assess the effect on placental efficiency of the non-centrality of the umbilical cord insertion and on chorionic vascular distribution to determine if cord centrality measurably affects placental function as reflected in birth weight