Vinculin binding angle in podosomes revealed by high resolution microscopy

Podosomes are highly dynamic actin-rich adhesive structures formed predominantly by cells of the monocytic lineage, which degrade the extracellular matrix. They consist of a core of F-actin and actin-regulating proteins, surrounded by a ring of adhesion-associated proteins such as vinculin. We have characterised the structure of podosomes in macrophages, particularly the structure of the ring, using three super-resolution fluorescence microscopy techniques: stimulated emission depletion microscopy, structured illumination microscopy and localisation microscopy. Rather than being round, as previously assumed, we found the vinculin ring to be created from relatively straight strands of vinculin, resulting in a distinctly polygonal shape. The strands bind preferentially at angles between 116° and 135°. Furthermore, adjacent vinculin strands are observed nucleating at the corners of the podosomes, suggesting a mechanism for podosome growth

Surviving historical Patagonian landscapes and climate: molecular insights from Galaxias maculatus

<p>Abstract</p> <p>Background</p> <p>The dynamic geological and climatic histories of temperate South America have played important roles in shaping the contemporary distributions and genetic diversity of endemic freshwater species. We use mitochondria and nuclear sequence variation to investigate the consequences of mountain barriers and Quaternary glacial cycles for patterns of genetic diversity in the diadromous fish <it>Galaxias maculatus </it>in Patagonia (~300 individuals from 36 locations).</p> <p>Results</p> <p>Contemporary populations of <it>G. maculatus</it>, east and west of the Andes in Patagonia, represent a single monophyletic lineage comprising several well supported groups. Mantel tests using control region data revealed a strong positive relationship when geographic distance was modeled according to a scenario of marine dispersal. (<it>r </it>= 0.69, <it>P = 0.055</it>). By contrast, direct distance between regions was poorly correlated with genetic distance (<it>r </it>= -0.05, <it>P </it>= 0.463). Hierarchical AMOVAs using mtDNA revealed that pooling samples according to historical (pre-LGM) oceanic drainage (Pacific vs. Atlantic) explained approximately four times more variance than pooling them into present-day drainage (15.6% vs. 3.7%). Further <it>post-hoc </it>AMOVA tests revealed additional genetic structure between populations east and west of the Chilean Coastal Cordillera (coastal vs. interior). Overall female effective population size appears to have remained relatively constant until roughly 0.5 Ma when population size rapidly increased several orders of magnitude [100× (60×-190×)] to reach contemporary levels. Maximum likelihood analysis of nuclear alleles revealed a poorly supported gene tree which was paraphyletic with respect to mitochondrial-defined haplogroups.</p> <p>Conclusions</p> <p>First diversifying in the central/north-west region of Patagonia, <it>G. maculatus </it>extended its range into Argentina via the southern coastal regions that join the Pacific and Atlantic oceans. More recent gene flow between northern populations involved the most ancient and most derived lineages, and was likely facilitated by drainage reversal(s) during one or more cooling events of the late Pleistocene. Overall female effective population size represents the end result of a widespread and several hundred-fold increase over approximately 0.5 Ma, spanning several climatic fluctuations of the Pleistocene. The minor influence of glacial cycles on the genetic structure and diversity of <it>G. maculatus </it>likely reflects the access to marine refugia during repeated bouts of global cooling. Evidence of genetic structure that was detected on a finer scale between lakes/rivers is most likely the result of both biological attributes (i.e., resident non-migratory behavior and/or landlocking and natal homing in diadromous populations), and the Coastal Cordillera as a dispersal barrier.</p

Ecological Aspects of a Wood Turtle, Glyptemys insculpta, Population at the Northern Limit of its Range in Québec

As part of a conservation research initiative, a population of Wood Turtles (Glyptemys insculpta) at the northern limit of its range was studied to ascertain characteristics of its demographics, morphometrics, density, mortality, feeding, and mating activities. Turtles were captured and marked during the activity period in 1996 and 1997. In addition, 20 individuals were radio-tracked weekly. A total of 188 turtles was captured and the size of the population in the study area was estimated at 238 turtles. The estimated population density based on this calculation is 0.44 turtles/ha. This is less than other studies indicating that population densities are greater in southern populations. Turtles from this population were large (carapace length of males=214.5 ± 4.21 mm, females=201.1 ± 10.88 mm) which supports the hypothesis that turtle size is negatively correlated with number of frost free days. The sex ratio was not significantly different from 1:1. Juvenile turtles accounted for 31.4% of the population. Observations of feeding habits support the claim that Wood Turtles are opportunistic omnivores. Of the 35 mating or courtship events observed, 77 % occurred in the fall and half of them between 11:00 and 13:00. Although limb and tail injuries and parasites were observed on many turtles, no dead turtles were observed. This last result, combined with the high rate of recruitment and even sex ratio suggests that this population is stable, making it an ideal population with which to make comparisons with other studies in areas where the species could be in decline

Electrostatically gated membrane permeability in inorganic protocells

Although several strategies are now available to produce functional microcompartments analogous to primitive cell-like structures, little progress has been made in generating protocell constructs with self-controlled membrane permeability. Here we describe the preparation of water-dispersible colloidosomes based on silica nanoparticles and delineated by a continuous semipermeable inorganic membrane capable of self-activated, electrostatically gated permeability. We use crosslinking and covalent grafting of a pH-responsive copolymer to generate an ultrathin elastic membrane that exhibits selective release and uptake of small molecules. This behaviour, which depends on the charge of the copolymer coronal layer, serves to trigger enzymatic dephosphorylation reactions specifically within the protocell aqueous interior. This system represents a step towards the design and construction of alternative types of artificial chemical cells and protocell models based on spontaneous processes of inorganic self-organization

Internal lipid synthesis and vesicle growth as a step toward self-reproduction of the minimal cell

One of the major properties of the semi-synthetic minimal cell, as a model for early living cells, is the ability to self-reproduce itself, and the reproduction of the boundary layer or vesicle compartment is part of this process. A minimal bio-molecular mechanism based on the activity of one single enzyme, the FAS-B (Fatty Acid Synthase) Type I enzyme from Brevibacterium ammoniagenes, is encapsulated in 1-palmitoyl-2oleoyl-sn-glycero-3-phosphatidylcholine (POPC) liposomes to control lipid synthesis. Consequently molecules of palmitic acid released from the FAS catalysis, within the internal lumen, move toward the membrane compartment and become incorporated into the phospholipid bilayer. As a result the vesicle membranes change in lipid composition and liposome growth can be monitored. Here we report the first experiments showing vesicles growth by catalysis of one enzyme only that produces cell boundary from within. This is the prototype of the simplest autopoietic minimal cell

Microbotanical residues for the study of early hominin tools

More than 2 million years ago in East Africa, the earliest hominin stone tools evolved amidst changes in resource base, with pounding technology playing a key role in this adaptive process. Olduvai Gorge (now Oldupai) is a famed locality that remains paramount for the study of human evolution, also yielding some of the oldest battering tools in the world. However, direct evidence of the resources processed with these technologies is lacking entirely. One way to obtain this evidence is through the analysis of surviving residues. Yet, linking residues with past processing activities is not simple. In the case of plant exploitation, this link can only be established by assessing site-based reference collections inclusive of both anthropogenic and natural residues as a necessary first step and comparative starting point. In this paper, we assess microbotanical remains from rock clasts sourced at the same quarry utilized by Oldowan hominins at Oldupai Gorge. We mapped this signal and analysed it quantitatively to classify its spatial distribution objectively, extracting proxies for taxonomic identification and further comparison with freestanding soils. In addition, we used blanks to manufacture pounding tools for blind, controlled replication of plant processing. We discovered that stone blanks are in fact environmental reservoirs in which plant remains are trapped by lithobionts, preserved as hardened accretions. Tool use, on the other hand, creates residue clusters; however, their spatial distribution can be discriminated from purely natural assemblages by the georeferencing of residues and statistical analysis of resulting patterns. To conclude, we provide a protocol for best practice and a workflow that has the advantage of overcoming environmental noise, reducing the risk of false positive, delivering a firm understanding of residues as polygenic mixtures, a reliable use of controls, and most importantly, a stronger link between microbotanical remains and stone tool use. © 2022. The Author(s).Materials and methods Results - Blanks as environmental reservoirs - Utilization creates residue clusters - Anthropogenic residue distribution - Of lichen habitability, proxy palimpsests, and hardened accretions - A protocol to study plant residue from Oldowan pounding tool

The role of constituents in multiword expressions: An interdisciplinary, cross-lingual perspective

Multiword expressions (MWEs), such as noun compounds (e.g. nickname in English, and Ohrwurm in German), complex verbs (e.g. give up in English, and aufgeben in German) and idioms (e.g. break the ice in English, and das Eis brechen in German), may be interpreted literally but often undergo meaning shifts with respect to their constituents. Theoretical, psycholinguistic as well as computational linguistic research remain puzzled by when and how MWEs receive literal vs. meaning-shifted interpretations, what the contributions of the MWE constituents are to the degree of semantic transparency (i.e., meaning compositionality) of the MWE, and how literal vs. meaning-shifted MWEs are processed and computed. This edited volume presents an interdisciplinary selection of seven papers on recent findings across linguistic, psycholinguistic, corpus-based and computational research fields and perspectives, discussing the interaction of constituent properties and MWE meanings, and how MWE constituents contribute to the processing and representation of MWEs. The collection is based on a workshop at the 2017 annual conference of the German Linguistic Society (DGfS) that took place at Saarland University in Saarbrücken, German

The role of constituents in multiword expressions: An interdisciplinary, cross-lingual perspective

Multiword expressions (MWEs), such as noun compounds (e.g. nickname in English, and Ohrwurm in German), complex verbs (e.g. give up in English, and aufgeben in German) and idioms (e.g. break the ice in English, and das Eis brechen in German), may be interpreted literally but often undergo meaning shifts with respect to their constituents. Theoretical, psycholinguistic as well as computational linguistic research remain puzzled by when and how MWEs receive literal vs. meaning-shifted interpretations, what the contributions of the MWE constituents are to the degree of semantic transparency (i.e., meaning compositionality) of the MWE, and how literal vs. meaning-shifted MWEs are processed and computed. This edited volume presents an interdisciplinary selection of seven papers on recent findings across linguistic, psycholinguistic, corpus-based and computational research fields and perspectives, discussing the interaction of constituent properties and MWE meanings, and how MWE constituents contribute to the processing and representation of MWEs. The collection is based on a workshop at the 2017 annual conference of the German Linguistic Society (DGfS) that took place at Saarland University in Saarbrücken, German