Statistical Mechanics of Glass Formation in Molecular Liquids with OTP as an Example

We extend our statistical mechanical theory of the glass transition from examples consisting of point particles to molecular liquids with internal degrees of freedom. As before, the fundamental assertion is that super-cooled liquids are ergodic, although becoming very viscous at lower temperatures, and are therefore describable in principle by statistical mechanics. The theory is based on analyzing the local neighborhoods of each molecule, and a statistical mechanical weight is assigned to every possible local organization. This results in an approximate theory that is in very good agreement with simulations regarding both thermodynamical and dynamical properties

Altering the Activation Mechanism in <i>Thermomyces lanuginosus</i> Lipase

It is shown by rational site-directed mutagenesis of the lid region in <i>Thermomyces lanuginosus</i> lipase that it is possible to generate lipase variants with attractive features, e.g., high lipase activity, fast activation at the lipid interface, ability to act on water-soluble substrates, and enhanced calcium independence. The rational design was based on the lid residue composition in <i>Aspergillus niger</i> ferulic acid esterase (FAEA). Five constructs included lipase variants containing the full FAEA lid, a FAEA-like lid, an intermediate lid of FAEA and TlL character, and the entire lid region from <i>Aspergillus terreus</i> lipase (AtL). To investigate an altered activation mechanism for each variant compared to that of TlL, a combination of activity- and spectroscopic-based measurements were applied. The engineered variant with a lid from AtL displayed interfacial activation comparable to that of TlL, whereas variants with FAEA lid character showed interfacial activation independence with pronounced activity toward pNP-acetate and pNP-butyrate below the critical micelle concentration. For variants with lipase and esterase character, lipase activity measurements further indicated a faster activation at the lipid interface. Relative to their activity toward pNP-ester substrates in calcium-rich buffer, all lid variants retained between 15 and 100% activity in buffer containing 5 mM EDTA whereas TlL activity was reduced to less than 2%, demonstrating the lid’s central role in governing calcium dependency. For FAEA-like lid variants, accessible hydrophobic surface area measurements showed an approximate 10-fold increase in the level of binding of extrinsic fluorophores to the protein surface relative to that of TlL accompanied by a blue shift in emission indicative of an open lid in aqueous solution. Together, these studies report on the successful alteration of the activation mechanism in TlL by rational design creating novel lipases with new, intriguing functionalities

The Enzymatic Activity of Lipases Correlates with Polarity-Induced Conformational Changes: A Trp-Induced Quenching Fluorescence Study

Triacylglycerol hydrolases (EC 3.1.1.3) are thought to become activated when they encounter the water–lipid interface causing a “lid” region to move and expose the catalytic site. Here, we tested this idea by looking for lid movements in <i>Thermomyces lanuginosus</i> lipase (TL lipase), and in variants with a mutated lid region of esterase (Esterase) and esterase/lipase (Hybrid) character. To measure lid movements, we employed the tryptophan-induced quenching (TrIQ) fluorescence method to measure how effectively a Trp residue on the lid of these mutants (at position 87 or 89) could quench a fluorescent probe (bimane) placed at nearby site 255 on the protein. To test if lid movement is induced when the enzyme detects a lower-polarity environment (such as at the water–lipid interface), we performed these studies in solvents with different dielectric constants (ε). The results show that lid movement is highly dependent on the particular lid residue composition and solvent polarity. The data suggest that in aqueous solution (ε = 80), the Esterase lid is in an “open” conformation, whereas for the TL lipase and Hybrid, the lid remains “closed”. At lower solvent polarities (ε < 46), the lid region for all of the mutants is more “open”. Interestingly, these behaviors mirror the structural changes thought to take place upon activation of the enzyme at the water–lipid interface. Together, these results support the idea that lipases are more active in low-polarity solvents because the lid adopts an “open” conformation and indicate that relatively small conformational changes in the lid region play a key role in the activation mechanism of these enzymes

Density, Viscosity, and Surface and Interfacial Tensions of Mixtures of Water + n -Butyl Acetate + 1-Propanol at 303.15 K and Atmospheric Pressure

Abstract Experimental densities, viscosities, and surface and interfacial tensions have been measured at 303.15 K for liquid mixtures of water + n-butyl acetate + 1-propanol. The excess molar volume, V E, viscosity, ?, and surface tension, ?, were calculated and rational functions due to Myers and Scott, and Pando et al. were used to describe the composition dependence of these properties. The viscosity, ?, of the mixtures was correlated using a theoretically based method developed from the Eyring theory using the above-mentioned rational functions to express the excess Gibbs energy of activation for viscous flow, G ?E. The UNIMOD model based on the Eyring theory was used to correlate the viscosity of the binaries and to predict the same property for ternary mixtures. To describe the above-mentioned properties of the ternary system, binary pair additivity and some empirical models were considered. The methods of Fu et al. and Li et al. were used to correlate the binary surface tension and also to predict the ternary behavior. The interfacial tension was correlated by the Li and Fu method