900 research outputs found
The Mitragyna speciosa (Kratom) Genome: a resource for data-mining potent pharmaceuticals that impact human health
Mitragyna speciosa (kratom) produces numerous compounds with pharmaceutical properties including the production of bioactive monoterpene indole and oxindole alkaloids. Using a linked-read approach, a 1,122,519,462âbp draft assembly of M. speciosa âRifatâ was generated with an N50 scaffold size of 1,020,971âbp and an N50 contig size of 70,448âbp that encodes 55,746 genes. Chromosome counting revealed that âRifatâ is a tetraploid with a base chromosome number of 11, which was further corroborated by orthology and syntenic analysis of the genome. Analysis of genes and clusters involved in specialized metabolism revealed genes putatively involved in alkaloid biosynthesis. Access to the genome of M. speciosa will facilitate an improved understanding of alkaloid biosynthesis and accelerate the production of bioactive alkaloids in heterologous hosts
Anderson localization of ballooning modes, quantum chaos and the stability of compact quasiaxially symmetric stellarators
The radially local magnetohydrodynamic(MHD) ballooning stability of a compact, quasiaxially symmetric stellarator (QAS), is examined just above the ballooning beta limit with a method that can lead to estimates of global stability. Here MHDstability is analyzed through the calculation and examination of the ballooning modeeigenvalue isosurfaces in the 3-space (s,α,Ξk); s is the edge normalized toroidal flux, α is the field linevariable, and Ξk is the perpendicular wave vector or ballooning parameter. Broken symmetry, i.e., deviations from axisymmetry, in the stellarator magnetic field geometry causes localization of the ballooning mode eigenfunction, and gives rise to new types of nonsymmetric eigenvalue isosurfaces in both the stable and unstable spectrum. For eigenvalues far above the marginal point, isosurfaces are topologically spherical, indicative of strong âquantum chaos.â The complexity of QAS marginal isosurfaces suggests that finite Larmor radius stabilization estimates will be difficult and that fully three-dimensional, high-nMHD computations are required to predict the beta limit.Research supported by U.S. DOE Contract No. DEAC02-76CH0373.
John Canik held a U.S. DOE National
Undergraduate Fellowship at Princeton Plasma Physics
Laboratory, during the summer of 2000
Alpha-aminoisobutyric acid uptake in primary cultures of astrocytes
Homotypically pure cultures of rat brain astrocytes were used to examine some aspects of non-neuronal A-system (alanine preferring) amino acid uptake. The Asystem specific probe, alpha-aminoisobutyric acid is transported rapidly, and a steady state distribution ratio of 9â25 is reached after 30 minute incubations. Kinetic estimates derived from uptake progress curves indicated a K m of 1.35 mM and a V max of 133 nmol/min/mg protein. Uptake is reduced in the absence of either Na + or K + . Elevations in extracellular K + , a putative metabolic modulator of neuroglia, did not affect uptake.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/45428/1/11064_2004_Article_BF00965086.pd
Magnetohydrodynamics and Plasma Cosmology
We study the linear magnetohydrodynamic (MHD) equations, both in the
Newtonian and the general-relativistic limit, as regards a viscous magnetized
fluid of finite conductivity and discuss instability criteria. In addition, we
explore the excitation of cosmological perturbations in anisotropic spacetimes,
in the presence of an ambient magnetic field. Acoustic, electromagnetic (e/m)
and fast-magnetosonic modes, propagating normal to the magnetic field, can be
excited, resulting in several implications of cosmological significance.Comment: 9 pages, RevTeX, To appear in the Proceedings of the Peyresq X
Meeting, IJTP Conference Serie
SIMAPâstructuring the network of protein similarities
Protein sequences are the most important source of evolutionary and functional information for new proteins. In order to facilitate the computationally intensive tasks of sequence analysis, the Similarity Matrix of Proteins (SIMAP) database aims to provide a comprehensive and up-to-date dataset of the pre-calculated sequence similarity matrix and sequence-based features like InterPro domains for all proteins contained in the major public sequence databases. As of September 2007, SIMAP covers âŒ17 million proteins and more than 6 million non-redundant sequences and provides a complete annotation based on InterPro 16. Novel features of SIMAP include a new, portlet-based web portal providing multiple, structured views on retrieved proteins and integration of protein clusters and a unique search method for similar domain architectures. Access to SIMAP is freely provided for academic use through the web portal for individuals at http://mips.gsf.de/simap/and through Web Services for programmatic access at http://mips.gsf.de/webservices/services/SimapService2.0?wsdl
Strong "quantum" chaos in the global ballooning mode spectrum of three-dimensional plasmas
The spectrum of ideal magnetohydrodynamic (MHD) pressure-driven (ballooning)
modes in strongly nonaxisymmetric toroidal systems is difficult to analyze
numerically owing to the singular nature of ideal MHD caused by lack of an
inherent scale length. In this paper, ideal MHD is regularized by using a
-space cutoff, making the ray tracing for the WKB ballooning formalism a
chaotic Hamiltonian billiard problem. The minimum width of the toroidal Fourier
spectrum needed for resolving toroidally localized ballooning modes with a
global eigenvalue code is estimated from the Weyl formula. This
phase-space-volume estimation method is applied to two stellarator cases.Comment: 4 pages typeset, including 2 figures. Paper accepted for publication
in Phys. Rev. Letter
- âŠ