Crop Updates 2001 - Pulses

This session covers sixty six papers from different authors: 1. Pulse Industry Highlights 2. CONTRIBUTORS 3. BACKGROUND 4. SUMMARY OF PREVIOUS RESULTS 2000 REGIONAL ROUNDUP 5. Northern agricultural Region, M. Harries, W. O’Neill, Agriculture Western Australia 6. Central Agricultural Region, R. French, Agriculture Western Australia 7. Great Southern and Lakes,N. Brandon, N. Runciman and S. White,Agriculture Western Australia 8. Esperance, M. Seymour, Agriculture Western Australia PULSE PRODUCTION AGRONOMY AND GENETIC IMPROVEMENT Faba bean: 9. germplasm evaluation, 10. Variety evaluation, 11. Sowing rate and time of sowing, Variation in root morphology, P. White and T. Pope, Agriculture Western Australia Desi chickpea: 12. Breeding highlights, 13. Variety evaluation, 14. Seed discolouration, C. Veitch, Agriculture Western Australia, 15. Performance under drought stress, J. Berger, N.C. Turner, CLIMA and CSIRO Plant Industry , K.H.M. Siddique, Agriculture Western Australia & CLIMA, 16. Resistance to chilling at flowering and to budworm, H. Clarke, CLIMA, 17. Effect of row spacing, sowing rate and orientation on growth and seed yield, G. Riethmuller, W. MacLeod, Agriculture Western Australia Kabuli chickpea, 18. variety and germplasm evaluation, 19. Premium quality kabuli chickpea development in the ORIA, 20. International screening for ascochyta blight resistance, 21. Evaluation of ascochyta resistant germplasm in Australia Field pea 22. Breeding highlights, 23. Variety evaluation, 24. Agronomic and varietal effects on seed quality, R. French, J. Millar and T.N. Khan, Agriculture Western Australia, 25. Seed yield and quality in the Great Southern, N. Brandon, R. Beermier, N. Brown and S. White,Agriculture Western Australia, 26. Herbicide tolerance of new varieties and lines, Esperance region, M. Seymour,Agriculture Western Australia, 27. Mullewa, H. Dhammu and T. Piper, D. Nicholson, M. D\u27Antuono, Agriculture Western Australia 28. Herbicide tolerance of Cooke on marginal soil, H. Dhammu and T. Piper, D.Nicholson, M. D\u27Antuono, Agriculture Western Australia, 29. Post emergent weed control using Raptor® Lentil 30. Variety evaluation 31. Evaluation of advanced breeding lines from CIPAL 32. Elite germplasm from ICARDA and ACIAR project, K. Regan,Agriculture Western Australia, J. Clements and K.H.M. Siddique, Agriculture Western Australia and CLIMA, C. Francis CLIMA 33. Single row evaluation of F3/F4 breeding lines, K. Regan,Agriculture Western Australia, J. Clements, Agriculture Western Australia and CLIMA Vetch 34. Germplasm evaluation 35. Time of sowing x fungicide, M. Seymour, Agriculture Western Australia 36. Tolerance to post emergent application of Sniper® M. Seymour, Agriculture Western Australia 37. Herbicide tolerance Narbon bean 38. Germplasm evaluation, M. Seymour, Agriculture Western Australia 39. Herbicide tolerance, M. Seymour, Agriculture Western Australia 40. Post emergent use of knockdown herbicides, M. Seymour, Agriculture Western Australia Albus lupin 41. Time of sowing, N. Brandon and R. Beermier, Agriculture Western Australia Lathyrus development 42. Field evaluation, C. Hanbury and K.H.M. Siddique, CLIMA and Agriculture Western Australia 43. Animal feeding trials, C. Hanbury and K.H.M. Siddique, Agriculture Western Australia, C. White, CSIRO, B. Mullan, Agriculture Western Australia, B. Hughes, SARDI, South Australia Species comparison 44. Time of sowing 45. Seed moisture of pulse species at harvest, G.P. Riethmuller and R.J. French Agriculture Western Australia 46.Rotational benefits of pulses on grey clay soils, N. Brandon, R. Beermier, R. Bowie, J. Warburton, Agriculture Western Australia P. Fisher, NRE, Victoria, M. Braimbridge, UWA Centre for Land Rehabilitation , F. Hoyle and W. Bowden, Agriculture Western Australia 47. Pulse species response to phosphorus and zinc, S. Lawrence, Z. Rengel, UWA, S.P. Loss, CSBP futurefarm M.D.A. Bolland, K.H.M. Siddique, W. Bowden, R. Brennan, Agriculture Western Australia 48. The effect of soil applied lime and lime pelleting on pulses, M. Seymour, Agriculture Western Australia 49. Antitranspirants 50. Mapping soils for pulses in the Great Southern, N. Brandon, P. Tille, N. Schoknecht, Agriculture Western Australia DEMONSTRATION OF PULSES IN THE FARMING SYSTEM 51. New field pea and faba bean varieties in the Great Southern 52. Harvesting methods for field pea in the Great Southern, N. Brandon, R. Beermier, M. Seymour, Agriculture Western Australia DISEASE AND PEST MANAGEMENT 53.Ascochyta blight of chickpea 54. Seed dressing and sowing depth 55. Foliar fungicide sprays 56. The ascochyta management package for 2001 57. Initiation ascochyta disease from infected stubble, J. Galloway and W. MacLeod, Agriculture Western Australia 58. Black spot of field pea 59. Ascochyta blight of chickpea 60. Ascochyta blight of faba bean 61. Pulse disease diagnostics, D. Wright and N. Burges Agriculture Western Australia Viruses in pulses 62. Virus infection causes seed discolouration and poor seed quality R. Jones and L. Latham, Agriculture Western Australia Insect pests 63. Aphid ecology in pulses, O. Edwards, J. Ridsdill-Smith and R. Horbury, CSIRO Entomology 64. Evaluation of transgenic field pea against pea weevils (Bruchus pisorum), Ms M.J. de Sousa Majer, Curtin University of Technology; N.C. Turner, CSIRO Plant Industry and D. Hardie, Agriculture Western Australia 65. Searching for markers for resistance to pea weevil, O. Byrne, CLIMA and Plant Sciences, UWA, N. Galwey, Plant Sciences, UWA, D. Hardie,Agriculture Western Australia and P. Smith, Botany, UWA 66. Improved stored grain fumigation on-farm with Phoscard®, R. Emery and E. Kostas, Agriculture Western Australia ACKNOWLEDGEMENTS PUBLICATIONS BY PULSE PRODUCTIVITY PROJECT STAFF VARIETIES PRODUCED AND COMMERCIALLY RELEASE

Re-Arrest Among Juvenile Justice-Involved Youth: An Examination Of The Static And Dynamic Risk Factors

The purpose of this study is to investigate the static and dynamic risk factors for re-arrest among detained youth by examining gender, race/ethnicity, age, special education and mental health variables (i.e., anger/irritability, depression/anxiety, somatic complaints, suicide ideation, thought disturbances, and traumatic experiences). The demographic profiles of detained youth with one admit were also compared with those with multiple admits to the juvenile detention center. With regards to static risk factors, older, white, and special education were significantly at risk of re-arrest. Concerning dynamic risk factors, only anger/irritability predicted re-arrest. Practice implications are also discussed

A peptide derived from TIMP-3 inhibits multiple angiogenic growth factor receptors and tumour growth and inflammatory arthritis in mice

The binding of vascular endothelial growth factor (VEGF) to VEGF receptor-2 (VEGFR-2) on the surface of vascular endothelial cells stimulates many steps in the angiogenic pathway. Inhibition of this interaction is proving of value in moderating the neovascularization accompanying age-related macular degeneration and in the treatment of cancer. Tissue inhibitor of metalloproteinases-3 (TIMP-3) has been shown to be a natural VEGFR-2 specific antagonist—an activity that is independent of its ability to inhibit metalloproteinases. In this investigation we localize this activity to the C-terminal domain of the TIMP-3 molecule and characterize a short peptide, corresponding to part of this domain, that not only inhibits all three VEGF-family receptors, but also fibroblast growth factor and platelet-derived growth factor receptors. This multiple-receptor inhibition may explain why the peptide was also seen to be a powerful inhibitor of tumour growth and also a partial inhibitor of arthritic joint inflammation in vivo

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads

Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics. 2009;10(1):430.Background Metagenomics is a new field of research on natural microbial communities. High-throughput sequencing techniques like 454 or Solexa-Illumina promise new possibilities as they are able to produce huge amounts of data in much shorter time and with less efforts and costs than the traditional Sanger technique. But the data produced comes in even shorter reads (35-100 basepairs with Illumina, 100-500 basepairs with 454-sequencing). CARMA is a new software pipeline for the characterisation of species composition and the genetic potential of microbial samples using short, unassembled reads. Results In this paper, we introduce WebCARMA, a refined version of CARMA available as a web application for the taxonomic and functional classification of unassembled (ultra-)short reads from metagenomic communities. In addition, we have analysed the applicability of ultra-short reads in metagenomics. Conclusions We show that unassembled reads as short as 35 bp can be used for the taxonomic classification of a metagenome. The web application is freely available at http://webcarma.cebitec.uni-bielefeld.d

In silico design and biological evaluation of a dual specificity kinase inhibitor targeting cell cycle progression and angiogenesis

Methodology: We have utilized a rational in silico-based approach to demonstrate the design and study of a novel compound that acts as a dual inhibitor of vascular endothelial growth factor receptor 2 (VEGFR2) and cyclin-dependent kinase 1 (CDK1). This compound acts by simultaneously inhibiting pro-Angiogenic signal transduction and cell cycle progression in primary endothelial cells. JK-31 displays potent in vitro activity against recombinant VEGFR2 and CDK1/cyclin B proteins comparable to previously characterized inhibitors. Dual inhibition of the vascular endothelial growth factor A (VEGF-A)-mediated signaling response and CDK1-mediated mitotic entry elicits anti-Angiogenic activity both in an endothelial-fibroblast co-culture model and a murine ex vivo model of angiogenesis

Rhinovirus-induced basic fibroblast growth factor release mediates airway remodeling features

BACKGROUND: Human rhinoviruses, major precipitants of asthma exacerbations, induce lower airway inflammation and mediate angiogenesis. The purpose of this study was to assess the possibility that rhinoviruses may also contribute to the fibrotic component of airway remodeling. METHODS: Levels of basic fibroblast growth factor (bFGF) mRNA and protein were measured following rhinovirus infection of bronchial epithelial cells. The profibrotic effect of epithelial products was assessed by DNA synthesis and matrix metalloproteinase activity assays. Moreover, epithelial cells were exposed to supernatants from cultured peripheral blood mononuclear cells, obtained from healthy donors or atopic asthmatic subjects and subsequently infected by rhinovirus and bFGF release was estimated. bFGF was also measured in respiratory secretions from atopic asthmatic patients before and during rhinovirus-induced asthma exacerbations. RESULTS: Rhinovirus epithelial infection stimulated mRNA expression and release of bFGF, the latter being positively correlated with cell death under conditions promoting rhinovirus-induced cytotoxicity. Supernatants from infected cultures induced lung fibroblast proliferation, which was inhibited by anti-bFGF antibody, and demonstrated increased matrix metalloproteinase activity. Rhinovirus-mediated bFGF release was significantly higher in an in vitro simulation of atopic asthmatic environment and, importantly, during rhinovirus-associated asthma exacerbations. CONCLUSIONS: Rhinovirus infection induces bFGF release by airway epithelium, and stimulates stroma cell proliferation contributing to airway remodeling in asthma. Repeated rhinovirus infections may promote asthma persistence, particularly in the context of atopy; prevention of such infections may influence the natural history of asthma

Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing

Biogas production from renewable resources is attracting increased attention as an alternative energy source due to the limited availability of traditional fossil fuels. Many countries are promoting the use of alternative energy sources for sustainable energy production. In this study, a metagenome from a production-scale biogas fermenter was analysed employing Roche's GS FLX Titanium technology and compared to a previous dataset obtained from the same community DNA sample that was sequenced on the GS FLX platform. Taxonomic profiling based on 16S rRNA-specific sequences and an Environmental Gene Tag (EGT) analysis employing CARMA demonstrated that both approaches benefit from the longer read lengths obtained on the Titanium platform. Results confirmed Clostridia as the most prevalent taxonomic class, whereas species of the order Methanomicrobiales are dominant among methanogenic Archaea. However, the analyses also identified additional taxa that were missed by the previous study, including members of the genera Streptococcus, Acetivibrio, Garciella, Tissierella, and Gelria, which might also play a role in the fermentation process leading to the formation of methane. Taking advantage of the CARMA feature to correlate taxonomic information of sequences with their assigned functions, it appeared that Firmicutes, followed by Bacteroidetes and Proteobacteria, dominate within the functional context of polysaccharide degradation whereas Methanomicrobiales represent the most abundant taxonomic group responsible for methane production. Clostridia is the most important class involved in the reductive CoA pathway (Wood-Ljungdahl pathway) that is characteristic for acetogenesis. Based on binning of 16S rRNA-specific sequences allocated to the dominant genus Methanoculleus, it could be shown that this genus is represented by several different species. Phylogenetic analysis of these sequences placed them in close proximity to the hydrogenotrophic methanogen Methanoculleus bourgensis. While rarefaction analyses still indicate incomplete coverage, examination of the GS FLX Titanium dataset resulted in the identification of additional genera and functional elements, providing a far more complete coverage of the community involved in anaerobic fermentative pathways leading to methane formation