Fungal genome assemblies and gene sets from metagenomic lichen thalli

Fungal genome assemblies and gene sets from metagenomic lichen thalli of two species assembled with SPAdes. Taxonomic assignment of metagenomic reads to Ascomycota was performed with MEGAN and MetaWatt.<br

KANDI WILEY, Soprano SENIOR RECITAL Tuesday, September 21, 1993 8:00 p.m. Lillian H. Duncan Recital Hall

No sound recording is available for this performance

Morphology of the new species <i>Lepra austropacifica</i>, habit of the holotype.

<p>Scale = 1mm.</p

Phylogenetic relationships of <i>Lepra</i> and allied genera.

<p>This is a RAxML tree based on a concatenated 6-locus data matrix. The numbers above each node represent bootstrap support and posterior probability values, respectively, only values higher than 50% shown. Strongly supported nodes in bold. Scale = 0.03 substitution per site.</p

Alignment-of-Protoparmelia-s.str_Concated-6-loci_2015

Protoparmelia-s-sl_Concated-6-loci-Alignment_RPB1-MCM7-TSR1-NULSU-MTSSU-nrIT

Phylogeny of <i>Protoparmelia s</i>. <i>str</i>. based on six concatenated loci.

<p>Numbers above branches indicate ML BS ≥ 70%. Branches in bold indicate Bayesian posterior probabilities (PP) ≥ 0.94. Specimen indicators include country codes (see Supporting information <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0124625#pone.0124625.s001" target="_blank">S1 Table</a>). Taxon names refer to putative species supported by ML BS ≥ 70% or Bayesian Inference (PP ≥ 0.94), and tested for speciation probabilities using BP&P and spedeSTEM. Colored boxes indicate species supported by BP&P (left) and spedeSTEM (right), respectively.</p

SpedeSTEM validation results.

<p>spedeSTEM validation results, using θ = 0.5. The absolute difference between the AICc score for the given model and the best-fitting one is listed under the column labeled ‘‘Di” and the model weighting is listed under the column labeled “wi”.</p><p>SpedeSTEM validation results.</p

Genetic characteristics of nuclear loci used in this study.

<p>Genetic characteristics of nuclear loci used in this study, including the total number of sequences per locus, length of the alignment; and best model of evolution selected using the Akaike information criterion as suggested by jModelTest.</p><p>Genetic characteristics of nuclear loci used in this study.</p

*BEAST species trees for <i>Protoparmelia s</i>. <i>str</i>. as suggested by ML (BS ≥ 70%) or Bayesian (PP ≥ 0.94).

<p>Posterior probabilities at nodes indicate support from the *BEAST analyses. The posterior probability of each delimited species calculated by BP&P are indicated in front of each putative species. Boxes in dark grey indicate clades not supported as separate taxa by BP&P. <i>Protoparmelia badia</i> B1 & B2 were supported as separate species whereas <i>P</i>. <i>badia</i> C1 & C2 were not supported as separate species (referred to as <i>P</i>. <i>badia</i> C) by BP&P. Box in light grey indicates species not supported as separate taxa by spedeSTEM.</p