The loci recommended as universal barcodes for plants on the basis of floristic studies may not work with congeneric species as exemplified by DNA barcoding of Dendrobium species

<p>Abstract</p> <p>Background</p> <p>Based on the testing of several loci, predominantly against floristic backgrounds, individual or different combinations of loci have been suggested as possible universal DNA barcodes for plants. The present investigation was undertaken to check the applicability of the recommended locus/loci for congeneric species with <it>Dendrobium </it>species as an illustrative example.</p> <p>Results</p> <p>Six loci, <it>matK, rbcL, rpoB, rpoC1, trnH-psbA </it>spacer from the chloroplast genome and ITS, from the nuclear genome, were compared for their amplification, sequencing and species discrimination success rates among multiple accessions of 36 <it>Dendrobium </it>species. The <it>trnH-psbA </it>spacer could not be considered for analysis as good quality sequences were not obtained with its forward primer. Among the tested loci, ITS, recommended by some as a possible barcode for plants, provided 100% species identification. Another locus, <it>matK</it>, also recommended as a universal barcode for plants, resolved 80.56% species. ITS remained the best even when sequences of investigated loci of additional <it>Dendrobium </it>species available on the NCBI GenBank (93, 33, 20, 18 and 17 of ITS, <it>matK, rbcL, rpoB </it>and <it>rpoC1</it>, respectively) were also considered for calculating the percent species resolution capabilities. The species discrimination of various combinations of the loci was also compared based on the 36 investigated species and additional 16 for which sequences of all the five loci were available on GenBank. Two-locus combination of <it>matK+rbcL </it>recommended by the Plant Working Group of Consortium for Barcoding of Life (CBOL) could discriminate 86.11% of 36 species. The species discriminating ability of this barcode was reduced to 80.77% when additional sequences available on NCBI were included in the analysis. Among the recommended combinations, the barcode based on three loci - <it>matK, rpoB </it>and <it>rpoC1</it>- resolved maximum number of species.</p> <p>Conclusions</p> <p>Any recommended barcode based on the loci tested so far, is not likely to provide 100% species identification across the plant kingdom and thus is not likely to act as a universal barcode. It appears that barcodes, if based on single or limited locus(i), would be taxa specific as is exemplified by the success of ITS among <it>Dendrobium </it>species, though it may not be suitable for other plants because of the problems that are discussed.</p

Metaphors for Inner-world in Amir Khusro

This study is focused on gaining knowledge of metaphysical aspects of Amir Khusr

Tocilizumab in COVID-19: a study of adverse drug events reported in the WHO database

leading to pneumonitis with a poor prognosis. Tocilizumab, a type of humanized monoclonal antibody antagonizing interleukin-6 receptors, is currently utilized to treat COVID-19. The present study reviews tocilizumab adverse drug events (ADEs) reported in the World Health Organization (WHO) pharmacovigilance database. Research design and methods: All suspected ADEs associated with tocilizumab between April to August 2020 were analyzed based on COVID-19 patients’ demographic and clinical variables, and severity of involvement of organ system. Results: A total of 1005 ADEs were reported among 513 recipients. The majority of the ADEs (46.26%) were reported from 18–64 years, were males and reported spontaneously. Around 80%, 20%, and 64% were serious, fatal, and administered intravenously, respectively. ‘Injury, Poisoning, and Procedural Complications’ remain as highest (35%) among categorized ADEs. Neutropenia, hypofibrinogenemia were common hematological ADEs. The above 64 years was found to have significantly lower odds than of below 45 years. In comparison, those in the European Region have substantially higher odds compared to the Region of Americas. Conclusion: Neutropenia, superinfections, reactivation of latent infections, hepatitis, and cardiac abnormalities were common ADEs observed that necessitate proper monitoring and reporting

Tocilizumab in COVID-19: a study of adverse drug events reported in the WHO database

leading to pneumonitis with a poor prognosis. Tocilizumab, a type of humanized monoclonal antibody antagonizing interleukin-6 receptors, is currently utilized to treat COVID-19. The present study reviews tocilizumab adverse drug events (ADEs) reported in the World Health Organization (WHO) pharmacovigilance database. Research design and methods: All suspected ADEs associated with tocilizumab between April to August 2020 were analyzed based on COVID-19 patients’ demographic and clinical variables, and severity of involvement of organ system. Results: A total of 1005 ADEs were reported among 513 recipients. The majority of the ADEs (46.26%) were reported from 18–64 years, were males and reported spontaneously. Around 80%, 20%, and 64% were serious, fatal, and administered intravenously, respectively. ‘Injury, Poisoning, and Procedural Complications’ remain as highest (35%) among categorized ADEs. Neutropenia, hypofibrinogenemia were common hematological ADEs. The above 64 years was found to have significantly lower odds than of below 45 years. In comparison, those in the European Region have substantially higher odds compared to the Region of Americas. Conclusion: Neutropenia, superinfections, reactivation of latent infections, hepatitis, and cardiac abnormalities were common ADEs observed that necessitate proper monitoring and reporting

Diagnostic value of Tzanck smear in various erosive, vesicular, and bullous skin lesions

Background: Cutaneous cytology has long been shown to be useful in the diagnosis of several erosive, vesicular, and bullous skin lesions. The Tzanck smear although an old tool, still remains a simple, rapid, easily applied, and inexpensive test for these skin lesions. Aims and Objectives: The aim of this study was to evaluate the diagnostic value of Tzanck smear by determining its sensitivity and specificity in various erosive, vesicular, and bullous skin lesions. Materials and Methods: One hundred and forty-two patients with erosive, vesicular, and/or bullous skin lesions were included in the study. Four groups of disorders were identified: infections, immunologic disorders, genodermatosis, and spongiotic dermatitis. All the study cases were evaluated by Tzanck smear. Definitive diagnosis was established by standard diagnostic techniques (including when appropriate, viral serology, bacterial culture, histopathology, direct immunoflourescence). Results: The sensitivity and specificity of cytologic findings was respectively 86.36% and 91.30% for viral infections; for bacterial infections, it was 85.7% and 66.6%. The sensitivity and specificity of Tzanck smear was respectively 85.0% and 83.33% for pemphigus; for bullous pemhigoid it was 11.11% and 100.0%. Tzanck smear sensitivity in genodermatoses was 100%. The sensitivity and specificity of the test in spongiotic dermatitis could not be calculated due to an insufficient number of patients. Conclusion: The Tzanck smear is a quick and reliable tool for the evaluation of various erosive and vesiculobullous skin lesions

Evaluating five different Loci (rbcL, rpoB, rpoC1, matK and ITS) for DNA Barcoding of Indian Orchids

Orchidaceae, one of the largest families of angiosperms, is represented in India by 1600 species distributed in diverse habitats. Orchids are in high demand due to their beautiful flowers and therapeutic properties. Overexploitation and habitat destruction have made many orchid species endangered. In the absence of effective identification methods, illicit trade of orchids continues unabated. Considering DNA barcoding as a potential identification tool, species discrimination capability of five loci, ITS matK, rbcL, rpoB and rpoC1, was tested in 393 accessions of 94 Indian orchid species belonging to 47 genera, including one listed in Appendix I of CITES and 26 medicinal species. ITS provided the highest species discrimination rate of 94.9%. While, among the chloroplast loci, matK provided the highest species discrimination rate of 85.7%. None of the tested loci individually discriminated 100% of the species. Therefore, multi-locus combinations of up to five loci were tested for their species resolution capability. Among two-locus combinations, the maximum species resolution (86.7%) was provided by ITS+matK. ITS and/or matK sequences of the medicinal orchids were species specific, thus providing unique molecular identification tags for their identification and detection. These observations emphasize the need for the inclusion of ITS in the core barcode for plants, whenever required and available.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author

Polyphenolic characterization and evaluation of multimode antioxidant, cytotoxic, biocompatibility and antimicrobial potential of selected ethno-medicinal plant extracts

Introduction: Scientific evidence about biological profile of natural products can support their traditional uses. The current work was aimed to assess phytochemical and biological profile of nine medicinal plants collected from Herbalists. Methods: Extracts prepared in different solvents were subjected to phytochemical, antioxidant, enzyme inhibitory, cytotoxic, and antimicrobial activities. Reverse phase-high performance liquid chromatography (RP-HPLC) analysis was performed for the quantification of polyphenols. Results: Results showed methanol extract (M) being potent as compared to others. Gentian lutea M showed maximum extract recovery (15.00 ± 0.11 % w/w) and TFC (30.82 ± 0.21 μg QE/mg extract). Nigella sativa M displayed highest TPC (44.99 ± 0.43 μg GAE/mg extract) and TAC (334.72 ± 0.35 μg AAE/ mg extract). Results showed noteworthy quantities of vanillic acid, rutin, kaempferol, emodin in ethyl acetate (EA) and methanol (M) extracts of plants assessed by RP-HPLC. Gentisic acid was highest (11.75 µg/mg extract) in T. arjuna M extract. Similarly, maximum %FRSA (82.28 ± 0.03 %) and TRP (160.40 ± 0.38 μg AAE/ mg extract) were depicted by Terminalia chebula and Chamomilla recutita, respectively. Moreover, Mentha longifolia and G. lutea M demonstrated noteworthy (p < 0.05) antibacterial activity against Staphylococcus aureus (14 ± 0.7 mm) and Klebsiella pneumoniae (12 ± 0.3 mm), respectively. Curcuma amada, C. recutita, Murraya koenigii and G. lutea M had significant α-glucosidase activity. Another good solvent for extraction was ethyl acetate (EA), whose extracts were secondary to methanol in producing significant biological profile. For example, EA of N. sativa (TPC: 1.46 ± 0.45 µg GAE/ mg extract), G. lutea (TRP: 160.33 ± 0.52 μg AAE/mg extract: ZOI of 12 ± 0.5 mm in K. pneumoniae) and Mormodica charantia (α-amylase inhibition: 39.5 ± 0.10 %) showed significant bioactivities. All extracts displayed mild antifungal protein kinase inhibition activities and were significantly (greater than80 %: p < 0.05) cytotoxic to brine shrimps with negligible hemolytic activity. Conclusion: Briefly, variable polarity solvent extracts of studied plants will be processed for isolation of antioxidant, cytotoxic, carbohydrate enzyme inhibitory and antibacterial compounds

Biogeochemical Behavior of Lead and Nickel as Influenced by Phosphatic Fertilizer Applied to Rice (Oryza sativa L.) Cultivars Grown under City Effluent Irrigation

The hydrology of arid to semi-arid regions is substantially different from that in humid regions due to scarce hydrological data distributions with dry climates and strong evapo-transpirative conditions. In the perspective of global water shortage, food security for all of the living beings has become a matter of great concern. Efficient use of water resources both in urban and rural environments and application of non-conventional water resources for irrigation are becoming increasingly important. In order to sustain crop production, the re-use of treated wastewater for irrigation of crops could be a good option. A pot experiment was set up to evaluate effects of different doses of di-ammonium phosphate (DAP) fertilizer on lead (Pb) and nickel (Ni) phyto-availability by two cultivars of rice irrigated with city effluent. Experiment was conducted in a completely randomized design (CRD) each with three replications. The results showed effective immobilization of Pb with applied phosphatic fertilizer. Among all of the tested treatments, the most effective treatment to reduce phyto-availability of Pb was T4 (248 kg P ha&minus;1) due to antagonistic interaction. While Ni showed inconsistent behavior with both synergistic and antagonistic interaction (biphasic) to applied phosphorus (P) rates. Data regarding various growth parameters such as plant height, number of tillers, shoot and root dry weights, straw and grain yields, and physiological attributes such as total chlorophyll contents, photosynthetic and transpiration rates showed significant (p &le; 0.05) responses to P application. An increasing trend was revealed in determined parameters with increased P application rates, with the exception of decreased plant height. The conclusion of the present remedial approach indicated that addition of P can significantly reduce the risks of rice grown under city effluent irrigation containing high Pb and Ni contents

Biogeochemical Behavior of Lead and Nickel as Influenced by Phosphatic Fertilizer Applied to Rice (<i>Oryza sativa</i> L.) Cultivars Grown under City Effluent Irrigation

The hydrology of arid to semi-arid regions is substantially different from that in humid regions due to scarce hydrological data distributions with dry climates and strong evapo-transpirative conditions. In the perspective of global water shortage, food security for all of the living beings has become a matter of great concern. Efficient use of water resources both in urban and rural environments and application of non-conventional water resources for irrigation are becoming increasingly important. In order to sustain crop production, the re-use of treated wastewater for irrigation of crops could be a good option. A pot experiment was set up to evaluate effects of different doses of di-ammonium phosphate (DAP) fertilizer on lead (Pb) and nickel (Ni) phyto-availability by two cultivars of rice irrigated with city effluent. Experiment was conducted in a completely randomized design (CRD) each with three replications. The results showed effective immobilization of Pb with applied phosphatic fertilizer. Among all of the tested treatments, the most effective treatment to reduce phyto-availability of Pb was T4 (248 kg P ha−1) due to antagonistic interaction. While Ni showed inconsistent behavior with both synergistic and antagonistic interaction (biphasic) to applied phosphorus (P) rates. Data regarding various growth parameters such as plant height, number of tillers, shoot and root dry weights, straw and grain yields, and physiological attributes such as total chlorophyll contents, photosynthetic and transpiration rates showed significant (p ≤ 0.05) responses to P application. An increasing trend was revealed in determined parameters with increased P application rates, with the exception of decreased plant height. The conclusion of the present remedial approach indicated that addition of P can significantly reduce the risks of rice grown under city effluent irrigation containing high Pb and Ni contents