A Simple Embedding Method for Scalar Hyperbolic Conservation Laws on Implicit Surfaces

We have developed a new embedding method for solving scalar hyperbolic conservation laws on surfaces. The approach represents the interface implicitly by a signed distance function following the typical level set method and some embedding methods. Instead of solving the equation explicitly on the surface, we introduce a modified partial differential equation in a small neighborhood of the interface. This embedding equation is developed based on a push-forward operator that can extend any tangential flux vectors from the surface to a neighboring level surface. This operator is easy to compute and involves only the level set function and the corresponding Hessian. The resulting solution is constant in the normal direction of the interface. To demonstrate the accuracy and effectiveness of our method, we provide some two- and three-dimensional examples

KINEMATICS AND PHYSIOLOGICAL EFFECT OF A SYNCHRONIZED BIPEDAL “RISE-SIT-GO” CYCLING EXERCISE

This study demonstrated the kinematics and physiological effect of a synchronized bipedal cycling exercise. Fifteen male subjects performed a 30-minutes exercise on a synchronized bipedal stationary bike and a conventional stationary bike at same cycling speed. The performance was evaluated by a metabolic testing system, a subjective rating of perceived exertion, an electromyography system and a motion analysis system, and was compared by paired t-tests. Results showed significant increases in oxygen uptake, energy expenditure, rating of perceived exertion, muscle activity in triceps, biceps, rectus abdominis, left gluteus maximus, left medial gastrocnemius, right tibialis anterior and left tibialis anterior, and range of motion of left hip, left and right knees, shoulders, elbows and wrists. The synchronized bipedal cycling exercise was more physically demanding

Physical activity as a modifiable risk factor for periodontal disease

Non-communicable diseases (NCDs), which contribute significantly to global morbidity, are largely preventable through behavioral changes. As with other NCDs, periodontitis is associated with modifiable risk factors such as smoking and stress and is linked to multiple adverse health outcomes through a shared pathway of chronic systemic inflammation. While the health benefits of physical activity have been widely promoted in public health and extensively studied for other systemic conditions, its impact on periodontal health has only recently started to gain attention. This article critically evaluates the current literature on the relationship between physical activity and periodontitis. While cross-sectional studies have shown an inverse association between physical activity levels and periodontitis risk in the general population, clinical oral health surveys of elite athletes with high levels of physical activity have nonetheless revealed poor periodontal conditions. Although causality has not been determined, physical activity could positively impact periodontitis directly, by reducing inflammatory biomarkers, and indirectly, through its modulatory effects on insulin sensitivity, obesity, bone density, stress, and other health promoting behaviors. Given the importance of risk factor control during initial periodontal therapy, understanding the role of physical activity as a potential behavioral risk modifier is paramount. The findings of this review provide an evidence-based overview of how physical activity could influence periodontitis. There is a need for longitudinal cohort studies to verify the temporality of the reported associations and exclude confounders, while interventions are needed to assess the efficacy of physical activity on periodontal treatment outcomes

Backbone and side-chain 1H, 13C and 15N assignments of the ubiquitin-associated domain of human X-linked inhibitor of apoptosis protein

X-linked inhibitor of apoptosis protein (XIAP), a leading member of the family of inhibitor of apoptosis (IAP) proteins, is considered as the most potent and versatile inhibitor of caspases and apoptosis. It has been reported that XIAP is frequently overexpressed in cancer and its expression level is implicated in contributing to tumorigenesis, disease progression, chemoresistance and poor patient-survival. Therefore, XIAP is one of the leading targets in drug development for cancer therapy. Recently, based on bioinformatics study, a previously unrecognized but evolutionarily conserved ubiquitin-associated (UBA) domain in IAPs was identified. The UBA domain is found to be essential for the oncogenic potential of IAP, to maintain endothelial cell survival and to protect cells from TNF-α-induced apoptosis. Moreover, the UBA domain is required for XIAP to activate NF-κB. In the present study, we report the near complete resonance assignments of the UBA domain-containing region of human XIAP protein. Secondary structure prediction based on chemical shift index (CSI) analysis reveals that the protein is predominately α-helical, which is consistent with the structures of known UBA proteins

Albumin-bilirubin grade predicts the outcomes of liver resection versus radiofrequency ablation for very early/early stage of hepatocellular carcinoma

Background and purposeWhether liver resection or ablation should be the first-line treatment for very early/early hepatocellular carcinoma (HCC) in patients who are candidates for both remains controversial. The aim of this study was to determine if the newly-developed Albumin-Bilirubin (ALBI) grade might help in treatment selections and to evaluate the survival of patients treated with liver resection and radiofrequency ablation (RFA).MethodsPatients with BCLC stage 0/A HCC who were treated with curative liver resection and RFA from 2003 to 2013 were included. Baseline clinical and laboratory parameters were retrieved and reviewed from the hospital database. Liver function and its impact on survival was assessed by the ALBI score. Overall and disease-free survivals were compared between the two groups.Results488 patients underwent liver resection (n = 318) and RFA (n = 170) for BCLC stage 0/A HCC during the study period. Liver resection offered superior survival to RFA in patients with BCLC stage 0/A HCC in the whole cohort. After propensity score matching, liver resection offered superior overall survival and disease-free survival to RFA in patients with ALBI grade 1 (P = 0.0002 and P ConclusionsLiver resection offered superior survival to RFA in patients with BCLC stage 0/A HCC. The ALBI grade could identify those patients with worse liver function who did not gain any survival advantage from curative liver resection

Structural Analysis of the UBA Domain of X-linked Inhibitor of Apoptosis Protein Reveals Different Surfaces for Ubiquitin-Binding and Self-Association

BACKGROUND: Inhibitor of apoptosis proteins (IAPs) belong to a pivotal antiapoptotic protein family that plays a crucial role in tumorigenesis, cancer progression, chemoresistance and poor patient-survival. X-linked inhibitor of apoptosis protein (XIAP) is a prominent member of IAPs attracting intense research because it has been demonstrated to be a physiological inhibitor of caspases and apoptosis. Recently, an evolutionarily conserved ubiquitin-associated (UBA) domain was identified in XIAP and a number of RING domain-bearing IAPs. This has placed the IAPs in the group of ubiquitin binding proteins. Here, we explore the three-dimensional structure of the XIAP UBA domain (XIAP-UBA) and how it interacts with mono-ubiquitin and diubiquitin conjugates. PRINCIPAL FINDINGS: The solution structure of the XIAP-UBA domain was determined by NMR spectroscopy. XIAP-UBA adopts a typical UBA domain fold of three tightly packed alpha-helices but with an additional N-terminal 3(10) helix. The XIAP-UBA binds mono-ubiquitin as well as Lys48-linked and linear-linked diubiquitins at low-micromolar affinities. NMR analysis of the XIAP-UBA-ubiquitin interaction reveals that it involves the classical hydrophobic patches surrounding Ile44 of ubiquitin and the conserved MGF/LV motif surfaces on XIAP-UBA. Furthermore, dimerization of XIAP-UBA was observed. Mapping of the self-association surface of XIAP-UBA reveals that the dimerization interface is formed by residues in the N-terminal 3(10) helix, helix alpha1 and helix alpha2, separate from the ubiquitin-binding surface. CONCLUSION: Our results provide the first structural information of XIAP-UBA and map its interaction with mono-ubiquitin, Lys48-linked and linear-linked diubiquitins. The notion that XIAP-UBA uses different surfaces for ubiquitin-binding and self-association provides a plausible model to explain the reported selectivity of XIAP in binding polyubiquitin chains with different linkages.published_or_final_versio

Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

VLSI design of high-speed and scalable schedulers for input-queued crossbar switches

Crossbars are frequently used as the switching fabric for high-performance packet switches (IP routers, ATM switches, Ethernet switches). The performance, functionality, and scalability (in terms of line rate and/or number of ports) of these switches are directly related to the arbitration/scheduling algorithm which must retrieve the state information of input queues, compute a (pseudo-) optimum matching, and configure the crossbar accordingly, all within one packet cycle. As a result, designing schedulers for high-speed and large number of links is a very challenging task. In particular, the scheduler should achieve high-performance under any traffic pattern. In addition, it should lend itself well to a hardware implementation. Hence, an integrated method that carefully takes into consideration the algorithmic design and the circuit design of the scheduler should be adopted. In this thesis, we undertook this challenging task by proposing, evaluating, and designing a crossbar scheduler that is efficient under any traffic pattern, and carefully designed to operate under high line rates and a large number of ports. Specifically, we have proposed a scheduling algorithm that outperform state-of-the-art related algorithms in this area. We then architected its design through a novel pipelining technique that results in tremendous performance improvement without requiring any additional hardware. Finally, we have implemented a 256-port scheduler using sophisticated circuit techniques such as parallelizing most of the logic. Dynamic logic, and pass transistor logic techniques are used so that it can operate at an OC-192 (10 Gb/s) rate while at the same time minimizing the layout area. We have carefully evaluated our scheduling algorithm and its design. Through extensive simulations, we have demonstrated that our algorithm performs a lot better than existing algorithms in terms of average delay and throughput under a variety of traffic scenarios. We have designed and layout one pipeline stage of the scheduler using TSMC 0.25 μ m CMOS technology. From HSPICE simulation, it can be shown that the scheduler pipeline stage can run within a 12ns clock period. The scheduler can run three to four iterations which satisfy the requirement of OC-192 line rate. It is believed that by running four iterations with the novel scheme, the scheduler can achieve the best matching already