Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice

<p>Abstract</p> <p>Background</p> <p>WD40 proteins represent a large family in eukaryotes, which have been involved in a broad spectrum of crucial functions. Systematic characterization and co-expression analysis of <it>OsWD40 </it>genes enable us to understand the networks of the WD40 proteins and their biological processes and gene functions in rice.</p> <p>Results</p> <p>In this study, we identify and analyze 200 potential <it>OsWD40 </it>genes in rice, describing their gene structures, genome localizations, and evolutionary relationship of each member. Expression profiles covering the whole life cycle in rice has revealed that transcripts of <it>OsWD40 </it>were accumulated differentially during vegetative and reproductive development and preferentially up or down-regulated in different tissues. Under phytohormone treatments, 25 <it>OsWD40 </it>genes were differentially expressed with treatments of one or more of the phytohormone NAA, KT, or GA3 in rice seedlings. We also used a combined analysis of expression correlation and Gene Ontology annotation to infer the biological role of the <it>OsWD40 </it>genes in rice. The results suggested that <it>OsWD40 </it>genes may perform their diverse functions by complex network, thus were predictive for understanding their biological pathways. The analysis also revealed that <it>OsWD40 </it>genes might interact with each other to take part in metabolic pathways, suggesting a more complex feedback network.</p> <p>Conclusions</p> <p>All of these analyses suggest that the functions of <it>OsWD40 </it>genes are diversified, which provide useful references for selecting candidate genes for further functional studies.</p

Effects of Emulsifiers on Preparing Spherical Urea-Formaldehyde Paraffin Capsules Modified by β

Urea-formaldehyde (UF) paraffin capsules (B-UPCS) modified by β-cyclodextrin (β-CD) were successfully prepared with excellent energy storage capacity using different emulsifiers. B-UPCS were characterized by FT-IR, DSC SEM, optical microscopy, and laser particle size distribution analyzer. The effects of different emulsifiers and the stirring rate of emulsion on the microstructure, average particle diameter, and the content of paraffin were discussed in details. The results show that OP-10 for use with PCMs as emulsifier has a better emulsifying capacity, thermal stability, and mechanical stirring stability than SDBS for use with PCMs as emulsifier. As a result, the optimum dosage of OP-10 was 3% to 7%, and the suitable stirring rate of emulsion was 7500 to 12500 rpm. At this time, the spherical particle diameter of B-UPCS was about 1.0 μm, the paraffin content was 78%, and the enthalpy of B-UPCS can reach 161.0 J/g

Multifunctional Ag@Fe(2)O(3) yolk-shell nanoparticles for simultaneous capture, kill, and removal of pathogen

We combined silver and iron oxide nanoparticles to make unique Ag@Fe(2)O(3) yolk-shell multifunctional nanoparticles by the Kirkendall effect. After the surface functionalization using glucose, the Ag@Fe(2)O(3)-Glu conjugates exhibited both high capture efficiency of bacteria and potent antibacterial activity. The Ag@Fe(2)O(3) yolk-shell nanostructures may offer a unique multifunctional platform for simultaneous rapid detection and capture of bacteria and safe detoxification treatment.National Science Foundation of China[21021061, 81000662]; Fundamental Research Funds for the Central Universities[2010121012]; Program for New Century Excellent Talents in University[NCET-10-0709

Plasma lipidomic profiling of thiopurine-induced leukopenia after NUDT15 genotype-guided dosing in Chinese IBD patients

IntroductionThiopurines, azathiopurine (AZA) and mercaptopurine (6-MP) have been regularly used in the treatment of inflammatory bowel disease (IBD). Despite optimized dosage adjustment based on the NUDT15 genotypes, some patients still discontinue or change treatment regimens due to thiopurine-induced leukopenia.MethodsWe proposed a prospective observational study of lipidomics to reveal the lipids perturbations associated with thiopurine-induced leukopenia. One hundred and twenty-seven IBD participants treated with thiopurine were enrolled, twenty-seven of which have developed thiopurine-induced leucopenia. Plasma lipid profiles were measured using Ultra-High-Performance Liquid Chromatography-Tandem Q-Exactive. Lipidomic alterations were validated with an independent validation cohort (leukopenia n = 26, non-leukopenia n = 74).ResultsUsing univariate and multivariate analysis, there were 16 lipid species from four lipid classes, triglyceride (n = 11), sphingomyelin (n = 1), phosphatidylcholine (n = 1) and lactosylceramide (n = 3) identified. Based on machine learning feature reduction and variable screening strategies, the random forest algorithm established by six lipids showed an excellent performance to distinguish the leukopenia group from the normal group, with a model accuracy of 95.28% (discovery cohort), 79.00% (validation cohort) and an area under the receiver operating characteristic (ROC) curve (ROC-AUC) of 0.9989 (discovery cohort), 0.8098 (validation cohort).DiscussionOur novel findings suggested that lipidomic provided unique insights into formulating individualized medication strategies for thiopurines in IBD patients

Preparation and swelling behavior of a novel self-assembled β-cyclodextrin/acrylic acid/sodium alginate hydrogel

A novel biodegradable β-cyclodextrin/acrylic acid/sodium alginate (CSA) hydrogel with a three-dimensional network structure was self-assembled by inverse suspension copolymerization. The CSA resin was pH sensitive and had good water absorption properties in pH 6-8 buffer solutions. At a β-CD:AA:SA mass ratio of 1:9:3 the CSA water absorbency was found to be 1403 g/g and the CSA hydrogel strength was 4.968 N. In 0.005-0.1 mol/L chloride salt and sulfate salt solutions the CSA water absorbencies increased as follows: NaCl\u3eKCl\u3eMgCl2\u3eCaCl2\u3eFeCl3, and Na2SO4\u3eK2SO4\u3eFeSO4\u3eAl2(SO4)3, respectively. The release of water from the CSA hydrogel occurred slowly over 120 h. The biodegradation efficiency of the resin reached 85.3% for Lentinula edodes. The super water absorbency, good salt resistance and excellent water retention properties of CSA make it suitable for application as an agricultural water retention agent in saline soils

A Comprehensive Network Pharmacology-Based Strategy to Investigate Multiple Mechanisms of HeChan Tablet on Lung Cancer

Background. HeChan tablet (HCT) is a traditional Chinese medicine preparation extensively prescribed to treat lung cancer in China. However, the pharmacological mechanisms of HCT on lung cancer remain to be elucidated. Methods. A comprehensive network pharmacology-based strategy was conducted to explore underlying mechanisms of HCT on lung cancer. Putative targets and compounds of HCT were retrieved from TCMSP and BATMAN-TCM databases; related genes of lung cancer were retrieved from OMIM and DisGeNET databases; known therapeutic target genes of lung cancer were retrieved from TTD and DrugBank databases; PPI networks among target genes were constructed to filter hub genes by STRING. Furthermore, the pathway and GO enrichment analysis of hub genes was performed by clusterProfiler, and the clinical significance of hub genes was identified by The Cancer Genome Atlas. Result. A total of 206 compounds and 2,433 target genes of HCT were obtained. 5,317 related genes of lung cancer and 77 known therapeutic target genes of lung cancer were identified. 507 unique target genes were identified among HCT-related genes of lung cancer and 34 unique target genes were identified among HCT-known therapeutic target genes of lung cancer. By PPI networks, 11 target genes AKT1, TP53, MAPK8, JUN, EGFR, TNF, INS, IL-6, MYC, VEGFA, and MAPK1 were identified as major hub genes. IL-6, JUN, EGFR, and MYC were shown to associate with the survival of lung cancer patients. Five compounds of HCT， quercetin, luteolin, kaempferol, beta-sitosterol, and baicalein were recognized as key compounds of HCT on lung cancer. The gene enrichment analysis implied that HCT probably benefitted patients with lung cancer by modulating the MAPK and PI3K-Akt pathways. Conclusion. This study predicted pharmacological and molecular mechanisms of HCT against lung cancer and could pave the way for further experimental research and clinical application of HCT

Temperature-Insensitive Strain Sensing Based On Few Mode Fiber

In order to solve the problem of cross sensitivity of temperature and strain that generally exits in fiber-optic sensor, the strain and temperature sensing characteristics of LP01 and LP02 mode interference based on the inter-modal interference principle of the few mode fiber are studied, and phase sensitivity theory of inter-modal interference sensing is analyzed in detail. A temperature-insensitive strain-sensing few mode fiber with core diameter of 15.1 μm, core refractive index of 1.4512 at 1550 nm and cladding refractive index of 1.444 is designed based on the numerical simulation results of the few mode fiber. The experimental system is built to research the strain and temperature sensing characteristics of few mode fiber. The results show that the theoretical calculation can predict the experimental result well. The phase sensitivity of the strain in the few mode fiber is 0.0196 rad/μm in the range of 0~600 μm, which is insensitive to the temperature in the range of 30~330℃. It can effectively improve the problem of cross-sensitive of temperature and strain

42.4: Compact Stereo Waveguide Display Using a Polarization‐Multiplexed In‐coupling Metagrating

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/169290/1/sdtp15185.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/169290/2/sdtp15185_am.pd