Statistical Modelling of the Visual Impact of Subretinal Fluid and Associated Features

Introduction: The aim of this study was to develop a statistical model to determine the visual significance of subretinal fluid (SRF) in combination with other constructed optical coherence tomography (OCT) features in patients with wet age-related macular degeneration. Methods: The project used labelled data from 1211 OCTs of patients with neovascular macular degeneration (nAMD) attending the macular treatment centre of Manchester Royal Eye Hospital to build a statistical model to determine vision for any virtual, constructed OCT. A four-dimensional plot was created to represent the visual impact of SRF in OCTs in the context of the associated OCT characteristics of atrophy and subretinal hyperreflective material (SHRM). Results: The plot illustrates that at levels of SRF below 150 µm, the impact of SRF on vision is very low. Increasing the amount of fluid to 200 µm and beyond increases the impact on vision, but only if there is little atrophy or SHRM. Conclusions: This study suggests that levels of SRF up to around 150 µm thickness on OCT have minimal impact on vision. Greater levels of SRF have greater impact on vision, unless associated with significant amounts of atrophy or SHRM, when the additional effect of the SRF on vision remains low

Cross-slot extensional rheometry and the steady-state extensional response of long chain branched polymer melts

Stress-optical measurements at a flow stagnation point in confined geometries such as the cross-slot provide an elegant way to perform extensional testing for polymer melts. This technique is especially useful for samples which have a steady-state that cannot be reached (easily) in standard elongational rheometry, for example, highly branched polymers which show a non-homogeneous deformation that occurs in stretching experiments for Hencky strains above 4. In contrast to filament stretching, the cross-slot provides one point at which steady-state extensional flow may be sustained indefinitely. In this study, a Cambridge multi-pass rheometer [ Coventry, K. D., and M. R. Mackley, J. Rheol. 52, 401–415 (2008) ] is used to generate planar elongational flow in a cross-slot geometry for different polyethylene melts. The experimental results are compared to finite element flow simulations using the multi-mode Pompom constitutive equations. The steady-state elongational viscosity at the stagnation point is computed from the flow-induced stress birefringence and the strain-rate determined from numerical calculations of the flow field. We apply this technique to a range of different branched high- and low-density polyethylene melts. This demonstrates both the effectiveness of this technique and shows how the stress distribution in a complex flow depends on molecular structure. Cross slot extensional rheometry therefore provides a very promising technique for parameterizing molecular constitutive equations for LCB melts

A Map of the Universe

We have produced a new conformal map of the universe illustrating recent discoveries, ranging from Kuiper belt objects in the Solar system, to the galaxies and quasars from the Sloan Digital Sky Survey. This map projection, based on the logarithm map of the complex plane, preserves shapes locally, and yet is able to display the entire range of astronomical scales from the Earth's neighborhood to the cosmic microwave background. The conformal nature of the projection, preserving shapes locally, may be of particular use for analyzing large scale structure. Prominent in the map is a Sloan Great Wall of galaxies 1.37 billion light years long, 80% longer than the Great Wall discovered by Geller and Huchra and therefore the largest observed structure in the universe.Comment: Figure 8, and additional material accessible on the web at: http://www.astro.princeton.edu/~mjuric/universe

Data Deluge in Astrophysics: Photometric Redshifts as a Template Use Case

Astronomy has entered the big data era and Machine Learning based methods have found widespread use in a large variety of astronomical applications. This is demonstrated by the recent huge increase in the number of publications making use of this new approach. The usage of machine learning methods, however is still far from trivial and many problems still need to be solved. Using the evaluation of photometric redshifts as a case study, we outline the main problems and some ongoing efforts to solve them.Comment: 13 pages, 3 figures, Springer's Communications in Computer and Information Science (CCIS), Vol. 82

Anisotropy in the dielectric spectrum of hydration water and its relation to water dynamics

Proteins, molecules, and macromolecular assemblies in water are surrounded by a nanometer-sized hydration layer with properties very different from bulk water. Here, we use classical molecular dynamics simulations to study the dielectric response of hydration water next to hydrophobic and hydrophilic planar surfaces. We find the interfacial dielectricabsorption of water to be strongly anisotropic: compared to bulk water, which shows a broad dielectricabsorption maximum around 15 GHz in the imaginary part of the dielectric function, the absorption for electric fields parallel to the surface is of similar strength and shows a slight redshift, while for perpendicular electric fields it is strongly attenuated and blueshifted. This anisotropy is generic for hydrophobic and hydrophilic surfaces. From our spatially resolved dielectric functions and a modified Maxwell-Garnett theory that accounts for anisotropic hydration layers around spherical particles, the dielectricabsorption of solutions of organic molecules and micelles is derived to exhibit the experimentally known attenuation in combination with a redshift. These two features are traced back to the subtle interplay of interfacial depolarization effects and the dielectricanisotropy in the hydration layer. By a detailed analysis of the individual water molecule dynamics the perpendicular blueshift is shown not to be linked to accelerated water reorientation, but rather to dielectric boundary effects. Carefully conducted angularly resolved experiments at planar aqueous interfaces will be able to resolve this dielectricanisotropy and thus to confirm the subtle connection between spectralabsorption features and the molecular water dynamics in hydration layers

Theoretical study of pattern formation during the catalytic oxidation of CO on Pt{100} at low pressures

Theoretical studies have thus far been unable to model pattern formation during the reaction in this system on physically feasible length and time scales. In this paper, we derive a computational reaction-diffusion model for this system in which most of the input parameters have been determined experimentally. We model the surface on a mesoscopic scale intermediate between the microscopic size of CO islands and the macroscopic length scale of pattern formation. In agreement with experimental investigations [M. Eiswirth et al., Z. Phys. Chem., Neue Folge 144, 59 (1985)], the results from our model divide the CO and O-2 partial pressure parameter space into three regions defined by the level of CO coverage or the presence of sustained oscillations. We see CO fronts moving into oxygen-covered regions, with the 1 x 1 to hex phase change occurring at the leading edge. There are also traveling waves consisting of successive oxygen and CO fronts that move into areas of relatively high CO coverage, and in this case, the phase change is more gradual and of lower amplitude. The propagation speed of these reaction waves is similar to those observed experimentally for CO and oxygen fronts [H. H. Rotermund , J. Chem. Phys. 91, 4942 (1989); H. H. Rotermund , Nature (London) 343, 355 (1990); J. Lauterbach and H. H. Rotermund, Surf. Sci. 311, 231 (1994)]. In the two-dimensional version of our model, the traveling waves take the form of target patterns emitted from surface inhomogeneities.</p

Secreted CLIC3 drives cancer progression through its glutathione-dependent oxidoreductase activity

The secretome of cancer and stromal cells generates a microenvironment that contributes to tumour cell invasion and angiogenesis. Here we compare the secretome of human mammary normal and cancer-associated fibroblasts (CAFs). We discover that the chloride intracellular channel protein 3 (CLIC3) is an abundant component of the CAF secretome. Secreted CLIC3 promotes invasive behaviour of endothelial cells to drive angiogenesis and increases invasiveness of cancer cells both in vivo and in 3D cell culture models, and this requires active transglutaminase-2 (TGM2). CLIC3 acts as a glutathione-dependent oxidoreductase that reduces TGM2 and regulates TGM2 binding to its cofactors. Finally, CLIC3 is also secreted by cancer cells, is abundant in the stromal and tumour compartments of aggressive ovarian cancers and its levels correlate with poor clinical outcome. This work reveals a previously undescribed invasive mechanism whereby the secretion of a glutathione-dependent oxidoreductase drives angiogenesis and cancer progression by promoting TGM2-dependent invasion