Tree-mediated methane emissions from tropical and temperate peatlands

Methane production and transport processes in peatlands are fairly well understood, but growing evidence for emission of methane through trees has highlighted the need to revisit methane transport processes. In wetland trees, morphological adaptations such as development of hypertrophied lenticels, aerenchyma and adventitious roots in response to soil anoxia mediates gas transport, transporting both oxygen from the atmosphere to oxygen-deprived roots and soil-produced methane from the root-zone to the atmosphere. Although, tree-mediated methane emissions from temperate tree species have been confirmed, methane emissions from tropical tree species and processes that control tree-mediated methane emissions remain unclear. This study explains the role of trees in transporting soil-produced methane to the atmosphere and uncovers the principal mechanisms of tree-mediated methane emissions. Methane emissions from eight tropical tree species and two temperate tree species were studied in situ. The mechanisms and controls on tree-mediated methane emissions were investigated using three year old common alder (Alnus glutinosa; 50 trees) grown under two artificially controlled water-table positions. Methane fluxes from whole mesocosms, the soil surface and tree stems were measured using static closed chambers. Both temperate and tropical tree species released significant quantities of methane, with tropical trees dominating ecosystem level methane fluxes. In temperate peatlands, both the methane gas transport mechanism and quantity of methane emitted from stems is tree-species dependent. In Alnus glutinosa, no correlations were observed between stomatal behaviour and tree-mediated methane emissions, however, stem methane emissions were positively correlated with both stem lenticel density and dissolved soil methane concentration. In Alnus glutinosa, no emissions were observed from leaf surfaces. The results demonstrate that exclusion of tree-mediated methane emissions from flux measurement campaigns in forested peatlands will lead to an underestimation of ecosystem-wide methane emissions

Methanotrophy potential versus methane supply by pore water diffusion in peatlands

International audienceLow affinity methanotrophic bacteria consume a significant quantity of methane in wetland soils in the vicinity of plant roots and at the oxic-anoxic interface. Estimates of the efficiency of methanotrophy in peat soils vary widely in part because of differences in approaches employed to quantify methane cycling. High resolution profiles of dissolved methane abundance measured during the summer of 2003 were used to quantify rates of upward methane flux in four peatlands situated in Wales, UK. Aerobic incubations of peat from a minerotrophic and an ombrogenous mire were used to determine depth distributions of kinetic parameters associated with methane oxidation. The capacity for methanotrophy in a 3 cm thick zone immediately beneath the depth of nil methane abundance in pore water was significantly greater than the rate of upward diffusion of methane in all four peatlands. Rates of methane diffusion in pore water at the minerotrophic peatlands were small (?mol l?1 methane, indicating that precipitation events can impact methane distributions in pore water. Further work is needed to characterise the kinetics of methane oxidation spatially and temporally in different wetland types in order to determine generalized relationships for methanotrophy in peatlands that can be incorporated into process-based models of methane cycling in peat soils

Regulation of anaerobic methane oxidation in sediments of the Black Sea

International audienceAnaerobic oxidation of methane (AOM) and sulfate reduction (SRR) were investigated in sediments of the western Black Sea, where methane transport is controlled by diffusion. To understand the regulation and dynamics of methane production and oxidation in the Black Sea, rates of methanogenesis, AOM, and SRR were determined using radiotracers in combination with pore water chemistry and stable isotopes. On the shelf of the Danube paleo-delta and the Dnjepr Canyon, AOM did not consume methane effectively and upwards diffusing methane created an extended sulfate-methane transition zone (SMTZ) that spread over more than 2.5 m and was located in formerly limnic sediment. Measurable AOM rates occurred mainly in the lower part of the SMTZ, sometimes even at depths where sulfate seemed to be unavailable. The inefficiency of methane oxidation appears to be linked to the limnic history of the sediment, since in all cores methane was completely oxidized at the limnic-marine transition. The upward tailing of methane was less pronounced in a core from the deep sea in the area of the Dnjepr Canyon, the only station with a SMTZ close to the marine deposits. Sulfate reduction rates were mostly extremely low, and in the SMTZ were even lower than AOM rates. Rates of bicarbonate-based methanogenesis were below detection limit in two of the cores, but ?13C values of methane indicate a biogenic origin. The most depleted ?13C-signal was found in the SMTZ of the core from the deep sea, most likely as a result of carbon recycling between AOM and methanogenesis

Regulation of anaerobic methane oxidation in sediments of the Black Sea

Anaerobic oxidation of methane (AOM) and sulfate reduction (SRR) were investigated in sediments of the western Black Sea, where upward methane transport is controlled by diffusion. To understand the regulation and dynamics of methane production and oxidation in the Black Sea, rates of methanogenesis, AOM, and SRR were determined using radiotracers in combination with pore water chemistry and stable isotopes. In the Danube Canyon and the Dnjepr palaeo-delta AOM did not consume methane effectively and upwards diffusing methane created an extended sulfate-methane transition zone (SMTZ) that spread over more than 2.5 m and was located in brackish and limnic sediment. Measurable AOM rates occurred mainly in the lower part of the SMTZ, sometimes even at depths where sulfate seemed to be unavailable. The inefficiency of methane oxidation appears to be linked to the paleoceanographic history of the sediment, since in all cores methane was completely oxidized at the transition from the formerly oxic brackish clays to marine anoxic sediments. The upward tailing of methane was less pronounced in a core from the deep sea in the area of the Dnjepr Canyon, the only station with a SMTZ close to the marine deposits. Sub-surface sulfate reduction rates were mostly extremely low, and in the SMTZ were even lower than AOM rates. Rates of bicarbonate-based methanogenesis were below detection limit in two of the cores, but δ13C values of methane indicate a biogenic origin. The most δ13C- depleted isotopic signal of methane was found in the SMTZ of the core from the deep sea, most likely as a result of carbon recycling between AOM and methanogenesis

Soil Methanotrophy Model (MeMo v1.0): a process-based model to quantify global uptake of atmospheric methane by soil

Soil bacteria known as methanotrophs are the sole biological sink for atmospheric methane (CH4), a potent greenhouse gas that is responsible for  ∼  20 % of the human-driven increase in radiative forcing since pre-industrial times. Soil methanotrophy is controlled by a plethora of factors, including temperature, soil texture, moisture and nitrogen content, resulting in spatially and temporally heterogeneous rates of soil methanotrophy. As a consequence, the exact magnitude of the global soil sink, as well as its temporal and spatial variability, remains poorly constrained. We developed a process-based model (Methanotrophy Model; MeMo v1.0) to simulate and quantify the uptake of atmospheric CH4 by soils at the global scale. MeMo builds on previous models by Ridgwell et al. (1999) and Curry (2007) by introducing several advances, including (1) a general analytical solution of the one-dimensional diffusion–reaction equation in porous media, (2) a refined representation of nitrogen inhibition on soil methanotrophy, (3) updated factors governing the influence of soil moisture and temperature on CH4 oxidation rates and (4) the ability to evaluate the impact of autochthonous soil CH4 sources on uptake of atmospheric CH4. We show that the improved structural and parametric representation of key drivers of soil methanotrophy in MeMo results in a better fit to observational data. A global simulation of soil methanotrophy for the period 1990–2009 using MeMo yielded an average annual sink of 33.5 ± 0.6 Tg CH4 yr−1. Warm and semi-arid regions (tropical deciduous forest and open shrubland) had the highest CH4 uptake rates of 602 and 518 mg CH4 m−2 yr−1, respectively. In these regions, favourable annual soil moisture content ( ∼  20 % saturation) and low seasonal temperature variations (variations  <   ∼  6 °C) provided optimal conditions for soil methanotrophy and soil–atmosphere gas exchange. In contrast to previous model analyses, but in agreement with recent observational data, MeMo predicted low fluxes in wet tropical regions because of refinements in formulation of the influence of excess soil moisture on methanotrophy. Tundra and mixed forest had the lowest simulated CH4 uptake rates of 176 and 182 mg CH4 m−2 yr−1, respectively, due to their marked seasonality driven by temperature. Global soil uptake of atmospheric CH4 was decreased by 4 % by the effect of nitrogen inputs to the system; however, the direct addition of fertilizers attenuated the flux by 72 % in regions with high agricultural intensity (i.e. China, India and Europe) and by 4–10 % in agriculture areas receiving low rates of N input (e.g. South America). Globally, nitrogen inputs reduced soil uptake of atmospheric CH4 by 1.38 Tg yr−1, which is 2–5 times smaller than reported previously. In addition to improved characterization of the contemporary soil sink for atmospheric CH4, MeMo provides an opportunity to quantify more accurately the relative importance of soil methanotrophy in the global CH4 cycle in the past and its capacity to contribute to reduction of atmospheric CH4 levels under future global change scenarios

Estimating High-Affinity Methanotrophic Bacterial Biomass, Growth, and Turnover in Soil by Phospholipid Fatty Acid (13)C Labeling

A time series phospholipid fatty acid (PLFA) (13)C-labeling study was undertaken to determine methanotrophic taxon, calculate methanotrophic biomass, and assess carbon recycling in an upland brown earth soil from Bronydd Mawr (Wales, United Kingdom). Laboratory incubations of soils were performed at ambient CH(4) concentrations using synthetic air containing 2 parts per million of volume of (13)CH(4). Flowthrough chambers maintained a stable CH(4) concentration throughout the 11-week incubation. Soils were analyzed at weekly intervals by gas chromatography (GC), GC-mass spectrometry, and GC-combustion-isotope ratio mass spectrometry to identify and quantify individual PLFAs and trace the incorporation of (13)C label into the microbial biomass. Incorporation of the (13)C label was seen throughout the experiment, with the rate of incorporation decreasing after 9 weeks. The δ(13)C values of individual PLFAs showed that (13)C label was incorporated into different components to various extents and at various rates, reflecting the diversity of PLFA sources. Quantitative assessments of (13)C-labeled PLFAs showed that the methanotrophic population was of constant structure throughout the experiment. The dominant (13)C-labeled PLFA was 18:1ω7c, with 16:1ω5 present at lower abundance, suggesting the presence of novel type II methanotrophs. The biomass of methane-oxidizing bacteria at optimum labeling was estimated to be about 7.2 × 10(6) cells g(−1) of soil (dry weight). While recycling of (13)C label from the methanotrophic biomass must occur, it is a slower process than initial (13)CH(4) incorporation, with only about 5 to 10% of (13)C-labeled PLFAs reflecting this process. Thus, (13)C-labeled PLFA distributions determined at any time point during (13)CH(4) incubation can be used for chemotaxonomic assessments, although extended incubations are required to achieve optimum (13)C labeling for methanotrophic biomass determinations

Regulation of anaerobic methane oxidation in sediments of the Black Sea

Anaerobic oxidation of methane (AOM) and sulfate reduction (SRR) were investigated in sediments of the western Black Sea, where upward methane transport is controlled by diffusion. To understand the regulation and dynamics of methane production and oxidation in the Black Sea, rates of methanogenesis, AOM, and SRR were determined using radiotracers in combination with pore water chemistry and stable isotopes. In the Danube Canyon and the Dnjepr palaeo-delta AOM did not consume methane effectively and upwards diffusing methane created an extended sulfate-methane transition zone (SMTZ) that spread over more than 2.5 m and was located in brackish and limnic sediment. Measurable AOM rates occurred mainly in the lower part of the SMTZ, sometimes even at depths where sulfate seemed to be unavailable. The inefficiency of methane oxidation appears to be linked to the paleoceanographic history of the sediment, since in all cores methane was completely oxidized at the transition from the formerly oxic brackish clays to marine anoxic sediments. The upward tailing of methane was less pronounced in a core from the deep sea in the area of the Dnjepr Canyon, the only station with a SMTZ close to the marine deposits. Sub-surface sulfate reduction rates were mostly extremely low, and in the SMTZ were even lower than AOM rates. Rates of bicarbonate-based methanogenesis were below detection limit in two of the cores, but δ13C values of methane indicate a biogenic origin. The most δ13C- depleted isotopic signal of methane was found in the SMTZ of the core from the deep sea, most likely as a result of carbon recycling between AOM and methanogenesis