PP-012 Novel blaCTX-M-79 gene from community isolates in association with ISEcp1 in Shenyang, China

Digitalitzat per Artypla

The global landscape of intron retentions in lung adenocarcinoma

Background: The transcriptome complexity in an organism can be achieved by alternative splicing of precursor messenger RNAs. It has been revealed that alternations in mRNA splicing play an important role in a number of diseases including human cancers. Methods: In this study, we exploited whole transcriptome sequencing data from five lung adenocarcinoma tissues and their matched normal tissues to interrogate intron retention, a less studied alternative splicing form which has profound structural and functional consequence by modifying open reading frame or inserting premature stop codons. Results: Abundant intron retention events were found in both tumor and normal tissues, and 2,340 and 1,422 genes only contain tumor-specific retentions and normal-specific retentions, respectively. Combined with gene expression analysis, we showed that genes with tumor-specific retentions tend to be over-expressed in tumors, and the abundance of intron retention within genes is negatively related with gene expression, indicating the action of nonsense mediated decay. Further functional analysis demonstrated that genes with tumor-specific retentions include known lung cancer driver genes and are found enriched in pathways important in carcinogenesis. Conclusions: We hypothesize that intron retentions and consequent nonsense mediated decay may collectively counteract the over-expression of genes promoting cancer development. Identification of genes with tumor-specific retentions may also help develop targeted therapies

The effect of early and intensive statin therapy on ventricular premature beat or non-sustained ventricular tachycardia in patients with acute coronary syndrome

Background: Our study&#8217;s aim was to evaluate the prognostic value of early and intensive lipid-lowering treatment on ventricular premature beat or non-sustained ventricular tachycardia (NSVT) after acute coronary syndrome (STEMI, non-STEMI, and unstable angina pectoris). Methods: Some 586 patients with acute coronary syndrome were randomly divided into two groups: Group A (with conventional statin therapy, to receive 10 mg/day atorvastatin, n = 289) and Group B (given early and intensive statin therapy, 60 mg immediately and 40 mg/day atorvastatin, n = 297). The frequency of ventricular premature beat and NSVT was recorded via Holter monitoring after hospitalization (24 h and 72 h). Results: Seventy seven (11.8%) patients had NSVT. When compared to patients with no documented NSVT, patients with NSVT were older and more frequently had myocardial infarction in their history, diabetes mellitus, atrial fibrillation and an ejection fraction < 40%. Ventricular premature beats decreased significantly in the early and aggressive treatment group (24 h, p < 0.01; 72 h, p < 0.001). A significant reduction in NSVT was seen in the early and aggressive treatment group (24 h, p < 0.01; 72 h, p < 0.001). There were no side effects observed in either group. Conclusions: Early and intensive lipid-lowering treatment can clearly decrease ventricular premature beats and NSVT. (Cardiol J 2010; 17, 4: 381-385

Hyphodontia juniperi (Basidiomycota) newly recorded from China

Hyphodontia juniperi (Xylodon juniperi) was recorded for the first time for China in Jilin Province, Hebei Province, and in Beijing Municipality. General distribution of the species, its ecological and morphological differences from H.crustosa (Xylodon crustosus) are discussed. Bayesian reconstruction of phylogeny based on ITS1, 5.8S, and ITS2 nuclear ribosomal DNA sequences demonstrated that both H. crustosa and H. juniperi belong to a species complex, which requires richer molecular sampling for separation

Spiniform phase-encoded metagratings entangling arbitrary rational-order orbital angular momentum

Quantum entanglements between integer-order and fractional-order orbital angular momentums (OAMs) have been previously discussed. However, the entangled nature of arbitrary rational-order OAM has long been considered a myth due to the absence of an effective strategy for generating arbitrary rational-order OAM beams. Therefore, we report a single metadevice comprising a bilaterally symmetric grating with an aperture, creating optical beams with dynamically controllable OAM values that are continuously varying over a rational range. Due to its encoded spiniform phase, this novel metagrating enables the production of an average OAM that can be increased without a theoretical limit by embracing distributed singularities, which differs significantly from the classic method of stacking phase singularities using fork gratings. This new method makes it possible to probe the unexplored niche of quantum entanglement between arbitrarily defined OAMs in light, which could lead to the complex manipulation of microparticles, high-dimensional quantum entanglement and optical communication. We show that quantum coincidence based on rational-order OAM-superposition states could give rise to low cross-talks between two different states that have no significant overlap in their spiral spectra. Additionally, future applications in quantum communication and optical micromanipulation may be found

Characterization of particulate organic matters in the water column of the South China Sea using a shotgun proteomic approach

We characterized particulate organic matter (POM) collected from both the surface (41 m and 200 m) and mesopelagic layers (500 m and 1000 m) in the western South China Sea. By using a shotgun proteomic approach, a total of 3035 proteins matching one or more peptides were detected from four POM samples, 505 of which were identified as high-confidence proteins matching two or more peptides. Cyanobacteria was the largest contributor throughout the water column, while crustaceans and dinophytes were the two major groups contributing to the particulate proteins in the POM collected from 200 m. Subcellular locations and biological processes of particulate proteins varied significantly between the 41-m and 200-m layers: photosynthesis-associated proteins were highly abundant in the 41-m layer while tubulins and actins accumulated in the midwaters, especially at the 200-m layer. Porins, adenosine triphosphate synthases, nutrient transporters, molecular chaperones, and ectoenzymes were frequently detected in the POM samples and presented different distribution patterns within the water column, revealing complex biological processes at the different water layers and/or during the sinking of POM. The sources of surface and midwater particulate proteins are different, and the cellular metabolism, generation of energy, and transport processes in POM are attenuated rapidly down ocean water column. Zooplankton fecal pellet packages and membrane encapsulation might play important roles in protecting particulate proteins from degradation.Ministry of Science and Technology [2009CB421203]; National Natural Science Foundation of China [40821063, 40776068, 40876059]; Program for New Century Excellent Talents in University of Chin

Homology-Driven Proteomics of Dinoflagellates with Unsequenced Genomes Using MALDI-TOF/TOF and Automated De Novo Sequencing

This study developed a multilayered, gel-based, and underivatized strategy for de novo protein sequence analysis of unsequenced dinoflagellates using a MALDI-TOF/TOF mass spectrometer with the assistance of DeNovo Explorer software. MASCOT was applied as the first layer screen to identify either known or unknown proteins sharing identical peptides presented in a database. Once the confident identifications were removed after searching against the NCBInr database, the remainder was searched against the dinoflagellate expressed sequence tag database. In the last layer, those borderline and nonconfident hits were further subjected to de novo interpretation using DeNovo Explorer software. The de novo sequences passing a reliability filter were subsequently submitted to nonredundant MS-BLAST search. Using this layer identification method, 216 protein spots representing 158 unique proteins out of 220 selected protein spots from Alexandrium tamarense, a dinoflagellate with unsequenced genome, were confidently or tentatively identified by database searching. These proteins were involved in various intracellular physiological activities. This study is the first effort to develop a completely automated approach to identify proteins from unsequenced dinoflagellate databases and establishes a preliminary protein database for various physiological studies of dinoflagellates in the future