Heat and salinity budgets at the Stratus mooring in the southeast Pacific

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 119 (2014): 8162–8176, doi:10.1002/2014JC010256.The surface layer of the southeast Pacific Ocean (SEP) requires an input of cold, fresh water to balance heat gain, and evaporation from air-sea fluxes. Models typically fail to reproduce the cool sea surface temperatures (SST) of the SEP, limiting our ability to understand the variability of this climatically important region. We estimate the annual heat budget of the SEP for the period 2004–2009, using data from the upper 250 m of the Stratus mooring, located at 85°W 20°S, and from Argo floats. The surface buoy measures meteorological conditions and air-sea fluxes; the mooring line is heavily instrumented, measuring temperature, salinity, and velocity at more than 15 depth levels. We use a new method for estimating the advective component of the heat budget that combines Argo profiles and mooring velocity data, allowing us to calculate monthly profiles of heat advection. Averaged over the 6 year study period, we estimate a cooling advective heat flux of −41 ± 29 W m−2, accomplished by a combination of the mean gyre circulation, Ekman transport, and eddies. This compensates for warming fluxes of 32 ± 4 W m−2 due to air-sea fluxes and 7 ± 9 W m−2 due to vertical mixing and Ekman pumping. A salinity budget exhibits a similar balance, with advection of freshwater (−60 psu m) replenishing the freshwater lost through evaporation (47 psu m) and Ekman pumping (14 psu m).This work was supported by NOAA's Climate Program Office and by NSF grant OCE-0745508.2015-05-2

Subantarctic mode water in the southeast Pacific : effect of exchange across the Subantarctic Front

Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 118 (2013): 2052–2066, doi:10.1002/jgrc.20144.This study considered cross-frontal exchange as a possible mechanism for the observed along-front freshening and cooling between the 27.0 and 27.3 kg m − 3 isopycnals north of the Subantarctic Front (SAF) in the southeast Pacific Ocean. This isopycnal range, which includes the densest Subantarctic Mode Water (SAMW) formed in this region, is mostly below the mixed layer, and so experiences little direct air-sea forcing. Data from two cruises in the southeast Pacific were examined for evidence of cross-frontal exchange; numerous eddies and intrusions containing Polar Frontal Zone (PFZ) water were observed north of the SAF, as well as a fresh surface layer during the summer cruise that was likely due to Ekman transport. These features penetrated north of the SAF, even though the potential vorticity structure of the SAF should have acted as a barrier to exchange. An optimum multiparameter (OMP) analysis incorporating a range of observed properties was used to estimate the cumulative cross-frontal exchange. The OMP analysis revealed an along-front increase in PFZ water fractional content in the region north of the SAF between the 27.1 and 27.3 kg m − 3 isopycnals; the increase was approximately 0.13 for every 15° of longitude. Between the 27.0 and 27.1 kg m − 3 isopycnals, the increase was approximately 0.15 for every 15° of longitude. A simple bulk calculation revealed that this magnitude of cross-frontal exchange could have caused the downstream evolution of SAMW temperature and salinity properties observed by Argo profiling floats.NSF Ocean Sciences grant OCE-0327544 supported L.D.T., T.K.C., and J.H. and funded the two research cruises; NSF Ocean Sciences grant OCE-0850869 funded part of the analysis. BMS’s contribution to this work was undertaken as part of the Australian Climate Change Science Program, funded jointly by the Department of Climate Change and CSIRO.2013-10-2

The role of air-sea fluxes in Subantarctic Mode Water formation

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): C03040, doi:10.1029/2011JC007798.Two hydrographic surveys and a one-dimensional mixed layer model are used to assess the role of air-sea fluxes in forming deep Subantarctic Mode Water (SAMW) mixed layers in the southeast Pacific Ocean. Forty-two SAMW mixed layers deeper than 400 m were observed north of the Subantarctic Front during the 2005 winter cruise, with the deepest mixed layers reaching 550 m. The densest, coldest, and freshest mixed layers were found in the cruise's eastern sections near 77°W. The deep SAMW mixed layers were observed concurrently with surface ocean heat loss of approximately −200 W m−2. The heat, momentum, and precipitation flux fields of five flux products are used to force a one-dimensional KPP mixed layer model initialized with profiles from the 2006 summer cruise. The simulated winter mixed layers generated by all of the forcing products resemble Argo observations of SAMW; this agreement also validates the flux products. Mixing driven by buoyancy loss and wind forcing is strong enough to deepen the SAMW layers. Wind-driven mixing is central to SAMW formation, as model runs forced with buoyancy forcing alone produce shallow mixed layers. Air-sea fluxes indirectly influence winter SAMW properties by controlling how deeply the profiles mix. The stratification and heat content of the initial profiles determine the properties of the SAMW and the likelihood of deep mixing. Summer profiles from just upstream of Drake Passage have less heat stored between 100 and 600 m than upstream profiles, and so, with sufficiently strong winter forcing, form a cold, dense variety of SAMW.NSF Ocean Sciences grant OCE-0327544 supported LDT, TKC, and JH and funded the two research cruises. BMS’s contribution to this work was undertaken as part of the Australian Climate Change Science Program, funded jointly by the Department of Climate Change and Energy Efficiency and CSIRO. The QuikSCAT wind mapping method [Kelly et al., 1999], used to create the Kelly flux product, was sponsored by NASA’s Ocean Vector Winds Science. NCEP Reanalysis data were provided by the NOAA/OAR/ESRL PSD. WHOI’s OAFlux project is funded by the NOAA Climate Observations and Monitoring (COM) program.2012-09-2

Arrival of new great salinity anomaly weakens convection in the Irminger Sea

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biló, T., Straneo, F., Holte, J., & Le Bras, I. Arrival of new great salinity anomaly weakens convection in the Irminger Sea. Geophysical Research Letters, 49(11), (2022): e2022GL098857, https://doi.org/10.1029/2022gl098857.The Subpolar North Atlantic is prone to recurrent extreme freshening events called Great Salinity Anomalies (GSAs). Here, we combine hydrographic ocean analyses and moored observations to document the arrival, spreading, and impacts of the most recent GSA in the Irminger Sea. This GSA is associated with a rapid freshening of the upper Irminger Sea between 2015 and 2020, culminating in annually averaged salinities as low as the freshest years of the 1990s and possibly since 1960. Upon the GSA propagation into the Irminger Sea over the Reykjanes Ridge, the boundary currents rapidly advected its signal around the basin within months while fresher waters slowly spread and accumulated into the interior. The anomalies in the interior freshened waters produced by deep convection during the 2017–2018 winter and actively contributed to the suppression of deep convection in the following two winters.We gratefully acknowledge the US National Science Foundation for funding this work under grants OCE-1258823, OCE-1756272, OCE-1948335, and OCE-2038481

Investigation of non-uniform airflow signal oscillation during high frequency chest compression

BACKGROUND: High frequency chest compression (HFCC) is a useful and popular therapy for clearing bronchial airways of excessive or thicker mucus. Our observation of respiratory airflow of a subject during use of HFCC showed the airflow oscillation by HFCC was strongly influenced by the nonlinearity of the respiratory system. We used a computational model-based approach to analyse the respiratory airflow during use of HFCC. METHODS: The computational model, which is based on previous physiological studies and represented by an electrical circuit analogue, was used for simulation of in vivo protocol that shows the nonlinearity of the respiratory system. Besides, airflow was measured during use of HFCC. We compared the simulation results to either the measured data or the previous research, to understand and explain the observations. RESULTS AND DISCUSSION: We could observe two important phenomena during respiration pertaining to the airflow signal oscillation generated by HFCC. The amplitudes of HFCC airflow signals varied depending on spontaneous airflow signals. We used the simulation results to investigate how the nonlinearity of airway resistance, lung capacitance, and inertance of air characterized the respiratory airflow. The simulation results indicated that lung capacitance or the inertance of air is also not a factor in the non-uniformity of HFCC airflow signals. Although not perfect, our circuit analogue model allows us to effectively simulate the nonlinear characteristics of the respiratory system. CONCLUSION: We found that the amplitudes of HFCC airflow signals behave as a function of spontaneous airflow signals. This is due to the nonlinearity of the respiratory system, particularly variations in airway resistance

Structure and surface properties of eddies in the southeast Pacific Ocean

Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 118 (2013): 2295–2309, doi:10.1002/jgrc.20175.A number of studies have posited that coastally generated eddies could cool the southeast Pacific Ocean (SEP) by advecting cool, upwelled waters offshore. We examine this mechanism by characterizing the upper-ocean properties of mesoscale eddies in the SEP with a variety of observations and by estimating the surface-layer eddy heat flux divergence with satellite data. Cyclonic and anticyclonic eddies observed during two cruises featured deep positive salinity anomalies along the 26.5 kg m−3isopycnal, indicating that the eddies had likely trapped and transported coastal waters offshore. The cyclonic eddies observed during the cruises were characterized by shoaling isopycnals in the upper 200 m and cool near-surface temperature anomalies, whereas the upper-ocean structure of anticyclonic eddies was more variable. Using a variety of large-scale observations, including Argo float profiles, drifter records, and satellite sea surface temperature fields, we show that, relative to mean conditions, cyclonic eddies are associated with cooler surface temperatures and that anticyclonic eddies are associated with warmer surface temperatures. Within each data set, the mean eddy surface temperature anomalies are small and of approximately equal magnitude but opposite sign. Eddy statistics drawn from satellite altimetry data reveal that cyclonic and anticyclonic eddies occur with similar frequency and have similar average radii in the SEP. A satellite-based estimate of the surface-layer eddy heat flux divergence, while large in coastal regions, is small when averaged over the SEP, suggesting that eddies do not substantially contribute to cooling the surface layer of the SEP.This work was supported by NOAA’s Climate Program Office and by NSF Grant OCE-0745508. Microwave OI SST data are produced by Remote Sensing Systems and sponsored by National Oceanographic Partnership Program (NOPP), the NASA Earth Science Physical Oceanography Program, and the NASA MEaSUREs DISCOVER Project

Stratus 11 : Eleventh Setting of the Stratus Ocean Reference Station Cruise on board RV Moana Wave, March 31 - April 16, 2011, Arica - Arica, Chile

The Ocean Reference Station at 20°S, 85°W under the stratus clouds west of northern Chile is being maintained to provide ongoing climate-quality records of surface meteorology, air-sea fluxes of heat, freshwater, and momentum, and of upper ocean temperature, salinity, and velocity variability. The Stratus Ocean Reference Station (ORS Stratus) is supported by the National Oceanic and Atmospheric Administration’s (NOAA) Climate Observation Program. It is recovered and redeployed annually, with past cruises that have come between October and January. A NOAA vessel was not available, so this cruise was conducted on the chartered ship, Moana Wave, belonging to Stabbert Maritime. During the 2011 cruise on the Moana Wave to the ORS Stratus site, the primary activities were the recovery of the subsurface part of the Stratus 10 WHOI surface mooring, deployment of a new (Stratus 11) WHOI surface mooring, in-situ calibration of the buoy meteorological sensors by comparison with instrumentation installed on the ship by staff of the NOAA Earth System Research Laboratory (ESRL), and collection of underway and on station oceanographic data to continue to characterize the upper ocean in the stratus region. The Stratus 10 mooring had parted, and the surface buoy and upper part had been recovered earlier. Underway CTD (UCTD) profiles were collected along the track and during surveys dedicated to investigating eddy variability in the region. Surface drifters and subsurface floats were also launched along the track. The intent was also to visit a buoy for the Pacific tsunami warning system maintained by the Hydrographic and Oceanographic Service of the Chilean Navy (SHOA). This DART (Deep- Ocean Assessment and Reporting of Tsunami) buoy had been deployed in December 2010.Funding was provided by the National Oceanic and Atmospheric Administration under Grant No. NA0900AR432012

Stratus 12 : twelfth setting of the Stratus Ocean Reference Station

The Ocean Reference Station at 20°S, 85°W under the stratus clouds west of northern Chile is being maintained to provide ongoing climate-quality records of surface meteorology, air-sea fluxes of heat, freshwater, and momentum, and of upper ocean temperature, salinity, and velocity variability. The Stratus Ocean Reference Station (ORS Stratus) is supported by the National Oceanic and Atmospheric Administration’s (NOAA) Climate Observation Program. It is recovered and redeployed annually. A NOAA vessel was not available, so this cruise was conducted on the Melville, operated by the Scripps Institution of Oceanography. During the 2012 cruise on the Melville to the ORS Stratus site, the primary activities were the deployment of the Stratus 12 WHOI surface mooring, recovery of the previous (Stratus 11) WHOI surface mooring, in-situ calibration of the buoy meteorological sensors by comparison with instrumentation installed on the ship, and collection of underway and on station oceanographic data to continue to characterize the upper ocean in the stratus region. Underway CTD (UCTD) profiles were collected along the track. Surface drifters and subsurface floats were also launched along the track.Funding was provided by the National Oceanic and Atmospheric Administration under Grant No. NA09OAR4320129

Incidence and Correlates of HIV-1 RNA Detection in the Breast Milk of Women Receiving HAART for the Prevention of HIV-1 Transmission

The incidence and correlates of breast milk HIV-1 RNA detection were determined in intensively sampled women receiving highly active antiretroviral therapy (HAART) for the prevention of mother-to-child HIV-1 transmission.Women initiated HAART at 34 weeks of pregnancy. Breast milk was collected every 2-5 days during 1 month postpartum for measurements of cell-associated HIV DNA and cell-free HIV RNA. Plasma and breast milk were also collected at 2 weeks, 1, 3 and 6 months for concurrent HIV-1 RNA and DNA measurements. Regression was used to identify cofactors for breast milk HIV-1 RNA detection.Of 259 breast milk specimens from 25 women receiving HAART, 34 had detectable HIV-1 RNA (13%, incidence 1.4 episodes/100 person-days 95% CI = 0.97-1.9). Fourteen of 25 (56%) women had detectable breast milk HIV-1 RNA [mean 2.5 log(10) copies/ml (range 2.0-3.9)] at least once. HIV-1 DNA was consistently detected in breast milk cells despite HAART, and increased slowly over time, at a rate of approximately 1 copy/10(6) cells per day (p = 0.02). Baseline CD4, plasma viral load, HAART duration, and frequency of breast problems were similar in women with and without detectable breast milk HIV-1 RNA. Women with detectable breast milk HIV-1 RNA were more likely to be primiparous than women without (36% vs 0%, p = 0.05). Plasma HIV-1 RNA detection (OR = 9.0, 95%CI = 1.8-44) and plasma HIV-1 RNA levels (OR = 12, 95% CI = 2.5-56) were strongly associated with concurrent detection of breast milk HIV-1 RNA. However, no association was found between breast milk HIV-1 DNA level and concurrent breast milk HIV-1 RNA detection (OR = 0.96, 95%CI = 0.54-1.7).The majority of women on HAART had episodic detection of breast milk HIV-1 RNA. Breast milk HIV-1 RNA detection was associated with systemic viral burden rather than breast milk HIV-1 DNA

Stromal gene signatures in large-B-cell lymphomas.

BACKGROUND: The addition of rituximab to combination chemotherapy with cyclophosphamide, doxorubicin, vincristine, and prednisone (CHOP), or R-CHOP, has significantly improved the survival of patients with diffuse large-B-cell lymphoma. Whether gene-expression signatures correlate with survival after treatment of diffuse large-B-cell lymphoma is unclear. METHODS: We profiled gene expression in pretreatment biopsy specimens from 181 patients with diffuse large-B-cell lymphoma who received CHOP and 233 patients with this disease who received R-CHOP. A multivariate gene-expression-based survival-predictor model derived from a training group was tested in a validation group. RESULTS: A multivariate model created from three gene-expression signatures--termed germinal-center B-cell, stromal-1, and stromal-2 --predicted survival both in patients who received CHOP and patients who received R-CHOP. The prognostically favorable stromal-1 signature reflected extracellular-matrix deposition and histiocytic infiltration. By contrast, the prognostically unfavorable stromal-2 signature reflected tumor blood-vessel density. CONCLUSIONS: Survival after treatment of diffuse large-B-cell lymphoma is influenced by differences in immune cells, fibrosis, and angiogenesis in the tumor microenvironment