Persian Gulf response to a wintertime shamal wind event

The results from a~1 km resolution Hybrid Coordinate Ocean Model (HYCOM),forced by 1/2° Navy Operational Global Atmospheric Prediction System (NOGAPS) atmospheric data, were used in order to study the dynamic response of the Persian Gulf to winter time shamal forcing. Shamal winds are strong northwesterly winds that occur in the Persian Gulf area behind southeast moving cold fronts. The period from 20 November to 5 December 2004 included a well-defined shamal event that lasted 4–5 days. In addition to strong winds (16ms_1) the winter shamal also brought cold dry air(Ta=20 °C, qa=10 gkg-1) which led to a net heat loss in excess of 1000 W m-2 by increasing the latent heat flux. This resulted in SST cooling of up to 10°C most notably in the northern and shallower shelf regions. A sensitivity experiment with a constant specific humidity of qa= 15 gkg-1 confirmed that about 38% of net heat loss was due to the air– sea humidity differences. The time integral of SST cooling closely followed the air–sea heat loss, indicating an approximate one-dimensional vertical heat balance. It was found that the shamal induced convective vertical mixing provided a direct mechanism for the erosion of stratification and deepening of the mixed layer by 30m. The strong wind not only strengthened the circulation in the entire Persian Gulf but also established a northwestward flowing Iranian Coastal Current (ICC,25–30cms-1) from the Strait of Hormuz to about 52°E, where it veered off shore. The strongest negative sea level of 25–40cm was generated in the northern most portion of the Gulf while the wind set up against the coast of the United Arab Emirates established a positive sea level of 15–30 cm. The transport through the Strait of Hormuz at 56.2°E indicated an enhanced out flow of 0.25Sv (Sv=106 m3 s-1) during 24 November followed by an equivalent in flow on the next day

Upper-Ocean Response to Hurricane Ivan in a 1/25 Degrees Nested Gulf of Mexico HYCOM

[ 1] A 20-layer, 1/25 degrees nested Gulf of Mexico (GoM) Hybrid Coordinate Ocean Model (HYCOM) has been employed to examine the evolving three-dimensional ocean response to Hurricane Ivan during 14 - 16 September 2004. Results from several combinations of numerical experiments with and without assimilation of satellite-altimetry sea-surface height (SSH) are being analyzed and compared for the September 2004 hurricane period. A comparison of simulated zonal and meridional velocities using data assimilation shows improved agreement with profiler observations. The amplitude of the cold wake ( similar to 6 degrees C) produced by these simulations compared reasonably well with the observed changes in SST before and after the storm; however, the region of extreme cooling varied depending on the simulated location of the warm core eddy (WCE) that had detached from the Loop Current ( LC). While the simulated location of the WCE and LC in the assimilation runs agree better with satellite altimetry, the storm-induced SST cooling was 40% - 50% greater than the observed cooling. Overall, similar to 64% of the cooling was due to vertical mixing caused by turbulence generated from strong shear-stress across the base of the mixed layer. Vertical advection (upwelling) caused a significant portion of cooling (23.4%) in those runs that included data assimilation; a three fold increase from the nonassimilative runs (7%). This enhanced upper- ocean cooling was caused primarily by the prestorm thermal stratification; a shallower thermocline ( similar to 40 m) and a stronger upper- thermocline temperature gradient compared with the nonassimilative runs. In all the experiments the air-sea exchange was a small component of the mixed-layer heat budget which overall accounted for similar to 4

On the Mechanisms of Episodic Salinity Outflow Events in the Strait of Hormuz

Observations in the Strait of Hormuz (26.26 degrees N, 56.08 degrees E) during 1997-98 showed substantial velocity fluctuations, accompanied by episodic changes in the salinity outflow events with amplitude varying between 1 and 2 psu on time scales of several days to a few weeks. These events are characterized by a rapid increase in salinity followed by an abrupt decline. The mechanisms behind these strong pulses of salinity events are investigated with a whigh-resolution (similar to 1 km) Hybrid Coordinate Ocean Model (HYCOM) with particular reference to the year 2005. In accordance with the observations, the simulated salinity events are characterized by strong coherence between the enhanced flows in zonal and meridional directions. It is inferred that most of the simulated and observed outflow variability is associated with the continuous formation of strong mesoscale cyclonic eddies, whose origin can be traced upstream to around 26 degrees N, 55.5 degrees E. These cyclonic eddies have a diameter of about 63 km and have a remnant of Persian Gulf water (PGW) in their cores, which is eroded by lateral mixing as the eddies propagate downstream at a translation speed of 4.1 cm s(-1). The primary process that acts to generate mesoscale cyclones results from the barotropic instability of the exchange circulation through the Strait of Hormuz induced by fluctuations in the wind stress forcing. The lack of salinity events and cyclogenesis in a model experiment with no wind stress forcing further confirms the essential ingredients required for the development of strong cyclones and the associated outflow variability

Comparing the yield of Staphylococcus aureus recovery with static versus agitated broth incubation

Given the lack of standardization of methodologies for microbial recovery from built environments, we sought to compare the yield of Staphylococcus aureus with a broth enrichment method when incubated in agitated versus static conditions. Five unique strains of S. aureus at five different concentrations were cultured to compare direct plating, agitated broth enrichment, and static broth enrichment culture methods. All samples were incubated at 35° in ambient air. The lowest concentration recovered across three replicates and five strains did not differ between culture methods (Fisher’s exact test, p=0.50); notably, recovery of S. aureus was equivalent between static and agitated broth incubation. When broth enrichment was used (both static and agitated), the burden of S. aureus growth was higher (by semiquantitative assessment of 4-quadrant streaking) compared to the direct plating culture method. Optimizing strategies for microbial recovery is essential, particularly in areas of lower biomass, given the paucity of research concerning microbial communities of built environments. The results of this study, in conjunction with other experiments investigating microbiomes of built environments, can help inform protocols for standardizing culturing methods within built environments

Topical decolonization does not eradicate the skin microbiota of community-dwelling or hospitalized adults

Topical antimicrobials are often employed for decolonization and infection prevention and may alter the endogenous microbiota of the skin. The objective of this study was to compare the microbial communities and levels of richness and diversity in community-dwelling subjects and intensive care unit (ICU) patients before and after the use of topical decolonization protocols. We enrolled 15 adults at risk for Staphylococcus aureus infection. Community subjects (n = 8) underwent a 5-day decolonization protocol (twice daily intranasal mupirocin and daily dilute bleach-water baths), and ICU patients (n = 7) received daily chlorhexidine baths. Swab samples were collected from 5 anatomic sites immediately before and again after decolonization. A variety of culture media and incubation environments were used to recover bacteria and fungi; isolates were identified using matrix-assisted laser desorption ionization–time of flight mass spectrometry. Overall, 174 unique organisms were recovered. Unique communities of organisms were recovered from the community-dwelling and hospitalized cohorts. In the community-dwelling cohort, microbial richness and diversity did not differ significantly between collections across time points, although the number of body sites colonized with S. aureus decreased significantly over time (P = 0.004). Within the hospitalized cohort, richness and diversity decreased over time compared to those for the enrollment sampling (from enrollment to final sampling, P = 0.01 for both richness and diversity). Topical antimicrobials reduced the burden of S. aureus while preserving other components of the skin and nasal microbiota

Fault Growth and Propagation During Incipient Continental Rifting: Insights from a Combined Aeromagnetic and Shuttle Radar Topography Mission Digital Elevation Model Investigation of the Okavango Rift Zone, Northwest Botswana

Digital Elevation Models (DEM) extracted from the Shuttle Radar Topography Mission (SRTM) data and high-resolution aeromagnetic data are used to characterize the growth and propagation of faults associated with the early stages of continental extension in the Okavango Rift Zone (ORZ), northwest Botswana. Significant differences in the height of fault scarps and the throws across the faults in the basement indicate extended fault histories accompanied by sediment accumulation within the rift graben. Faults in the center of the rift either lack topographic expressions or are interpreted to have become inactive, or have large throws and small scarp heights indicating waning activity. Faults on the outer margins of the rift exhibit either (1) large throws or significant scarp heights and are considered older and active or (2) throws and scarp heights that are in closer agreement and are considered young and active. Fault linkages between major fault systems through a process of fault piracy have combined to establish an immature border fault for the ORZ. Thus, in addition to growing in length (by along-axis linkage of segments), the rift is also growing in width (by transferring motion to younger faults along the outer margins while abandoning older faults in the middle). Finally, utilization of preexisting zones of weakness allowed the development of very long faults (\u3e100 km) at a very early stage of continental rifting, explaining the apparent paradox between the fault length versus throw for this young rift. This study clearly demonstrates that the integration of the SRTM DEM and aeromagnetic data provides a 3-D view of the faults and fault systems, providing new insight into fault growth and propagation during the nascent stages of continental rifting

Evaluation of environmental sampling methods for detection of Staphylococcus aureus on fomites

We evaluated a variety of methods to recover S. aureus from inanimate surfaces. Two contact agar plates and three swab sampling methods were tested on porous and non-porous surfaces and bar soap. The cost and ease of use of each method was also evaluated. S. aureus was recovered using all methods on both porous and non-porous surfaces. S. aureus could not be detected on three of four brands of soap

Mupirocin and chlorhexidine resistance in Staphylococcus aureus in patients with community-onset skin and soft tissue infections

Decolonization measures, including mupirocin and chlorhexidine, are often prescribed to prevent Staphylococcus aureus skin and soft tissue infections (SSTI). The objective of this study was to determine the prevalence of high-level mupirocin and chlorhexidine resistance in S. aureus strains recovered from patients with SSTI before and after mupirocin and chlorhexidine administration and to determine whether carriage of a mupirocin- or chlorhexidine-resistant strain at baseline precluded S. aureus eradication. We recruited 1,089 patients with community-onset SSTI with or without S. aureus colonization. In addition to routine care, 483 patients were enrolled in a decolonization trial: 408 received intranasal mupirocin (with or without antimicrobial baths), and 258 performed chlorhexidine body washes. Patients were followed for up to 12 months with repeat colonization cultures. All S. aureus isolates were tested for high-level mupirocin and chlorhexidine resistance. At baseline, 23/1,089 (2.1%) patients carried a mupirocin-resistant S. aureus strain and 10/1,089 (0.9%) patients carried chlorhexidine-resistant S. aureus. Of 4 patients prescribed mupirocin, who carried a mupirocin-resistant S. aureus strain at baseline, 100% remained colonized at 1 month compared to 44% of the 324 patients without mupirocin resistance at baseline (P = 0.041). Of 2 patients prescribed chlorhexidine, who carried a chlorhexidine-resistant S. aureus strain at baseline, 50% remained colonized at 1 month compared to 48% of the 209 patients without chlorhexidine resistance at baseline (P = 1.0). The overall prevalence of mupirocin and chlorhexidine resistance is low in S. aureus isolates recovered from outpatients, but eradication efforts were less successful in patients carrying a mupirocin-resistant S. aureus strain at baseline

Characteristics of Mantle Fabrics beneath the South-Central United States: Constraints from Shear-Wave Splitting Measurements

New shear-wave splitting measurements at permanent broadband seismic stations in the south-central United States reveal the orientation and degree of polarization of mantle fabrics, and provide constraints on models for the formation of these fabrics. For stations on the stable North American craton, correspondence between observed polarization direction of the fast wave and the trend of Proterozoic and Paleozoic structures associated with rifts and orogenic belts implies a lithospheric origin for the observed anisotropy. The largest splitting times (up to 1.6 s) are observed at stations located in the ocean-continent transition zone, in which the fast directions are parallel to the Gulf of Mexico continental margin. The parallelism and the geometry of the keel of the craton beneath the study area suggest that asthenospheric flow around the keel of the North American craton, lithospheric fabrics developed during Mesozoic rifting, or a combination of these factors are responsible for the observed anisotropy on stations above the transitional crust

Cefazolin inoculum effect and methicillin-susceptible Staphylococcus aureus osteoarticular infections in children

Select methicillin-susceptibl