2,658 research outputs found
Magnetic interactions in transition metal doped ZnO : An abinitio study
We calculate the nature of magnetic interactions in transition-metal doped
ZnO using the local spin density approximation and LSDA+\textit{U} method of
density functional theory. We investigate the following four cases: (i) single
transition metal ion types (Cr, Mn, Fe, Co, Ni and Cu) substituted at Zn sites,
(ii) substitutional magnetic transition metal ions combined with additional Cu
and Li dopants, (iii) substitutional magnetic transition metal ions combined
with oxygen vacancies and (iv) pairs of magnetic ion types (Co and Fe, Co and
Mn, etc.). Extensive convergence tests indicate that the calculated magnetic
ground state is unusually sensitive to the k-point mesh and energy cut-off, the
details of the geometry optimizations and the choice of the
exchange-correlation functional. We find that ferromagnetic coupling is
sometimes favorable for single type substitutional transition metal ions within
the local spin density approximation. However, the nature of magnetic
interactions changes when correlations on the transition-metal ion are treated
within the more realistic LSDA + \textit{U} method, often disfavoring the
ferromagnetic state. The magnetic configuration is sensitive to the detailed
arrangement of the ions and the amount of lattice relaxation, except in the
case of oxygen vacancies when an antiferromagnetic state is always favored.Comment: 11 pages, 17 figure
Stage-specific control of oligodendrocyte survival and morphogenesis by TDP-43
Generation of oligodendrocytes in the adult brain enables both adaptive changes in neural circuits and regeneration of myelin sheaths destroyed by injury, disease, and normal aging. This transformation of oligodendrocyte precursor cells (OPCs) into myelinating oligodendrocytes requires processing of distinct mRNAs at different stages of cell maturation. Although mislocal- ization and aggregation of the RNA-binding protein, TDP-43, occur in both neurons and glia in neurodegenerative diseases, the consequences of TDP-43 loss within different stages of the oligo- dendrocyte lineage are not well understood. By performing stage-specific genetic inactivation of Tardbp in vivo, we show that oligodendrocyte lineage cells are differentially sensitive to loss of TDP- 43. While OPCs depend on TDP-43 for survival, with conditional deletion resulting in cascading cell loss followed by rapid regeneration to restore their density, oligodendrocytes become less sensitive to TDP-43 depletion as they mature. Deletion of TDP-43 early in the maturation process led to even- tual oligodendrocyte degeneration, seizures, and premature lethality, while oligodendrocytes that experienced late deletion survived and mice exhibited a normal lifespan. At both stages, TDP-43- deficient oligodendrocytes formed fewer and thinner myelin sheaths and extended new processes that inappropriately wrapped neuronal somata and blood vessels. Transcriptional analysis revealed that in the absence of TDP-43, key proteins involved in oligodendrocyte maturation and myelination were misspliced, leading to aberrant incorporation of cryptic exons. Inducible deletion of TDP-43 from oligodendrocytes in the adult central nervous system (CNS) induced the same progressive morphological changes and mice acquired profound hindlimb weakness, suggesting that loss of TDP-43 function in oligodendrocytes may contribute to neuronal dysfunction in neurodegenerative disease
The C-Fern (Ceratopteris richardii) Genome: Insights Into Plant Genome Evolution With the First Partial Homosporous Fern Genome Assembly
Ferns are notorious for possessing large genomes and numerous chromosomes. Despite decades of speculation, the processes underlying the expansive genomes of ferns are unclear, largely due to the absence of a sequenced homosporous fern genome. The lack of this crucial resource has not only hindered investigations of evolutionary processes responsible for the unusual genome characteristics of homosporous ferns, but also impeded synthesis of genome evolution across land plants. Here, we used the model fern species Ceratopteris richardii to address the processes (e.g., polyploidy, spread of repeat elements) by which the large genomes and high chromosome numbers typical of homosporous ferns may have evolved and have been maintained. We directly compared repeat compositions in species spanning the green plant tree of life and a diversity of genome sizes, as well as both short- and long-read-based assemblies of Ceratopteris. We found evidence consistent with a single ancient polyploidy event in the evolutionary history of Ceratopteris based on both genomic and cytogenetic data, and on repeat proportions similar to those found in large flowering plant genomes. This study provides a major stepping-stone in the understanding of land plant evolutionary genomics by providing the first homosporous fern reference genome, as well as insights into the processes underlying the formation of these massive genomes
Mechanical properties of ZnO epitaxial layers grown on a- and c-axis sapphire
The mechanical properties of zinc oxide epitaxial layers grown on a- and c-axis sapphire have been studied by spherical nanoindentation and cross-sectional transmission electron microscopy. As-grown threading dislocations, which are characteristic of epitaxialmaterial, combined with the presence of the much harder, underlying substrate are found to have a significant effect on the mechanical behavior of ZnO epilayers as compared to bulk material. Epilayer material is found to be significantly harder than its bulk counterpart. For a-axis epilayers, analysis of loadâunload data yields a hardness of 6.6±1.2GPa, and 5.75±0.8GPa for c-axis layers. We attribute this increased hardness to strain compensation via the presence of as-grown defects. These defects inhibit the slip mechanism responsible for relative softness of bulk single crystals. The absence of pop-in events from analyzed continuous-load nanoindentation data is further evidence for strain compensation by native defects within the epilayers. Large variations in the spread of collected data are indicative of inhomegenity in the epilayers.The University of Sydney, for constructive comments
and support. The work at UF is partially supported by
the AFOSR under Grant Nos. F49620-03-1-0370 sT.S.d and
NSF DMR 0400416
Dirty Black Holes and Hairy Black Holes
An approach based on considerations of the non-classical energy momentum
tensor outside the event horizon of a black hole provides additional physical
insight into the nature of discrete quantum hair on black holes and its effect
on black hole temperature. Our analysis both extends previous work based on the
Euclidean action techniques, and corrects an omission in that work. We also
raise several issues related to the effects of instantons on black hole
thermodynamics and the relation between these effects and results in two
dimensional quantum field theory.Comment: 13 pages, Latex, submitted to Physical Review Letter
Prognostic relevance of a T-type calcium channels gene signature in solid tumours: A correlation ready for clinical validation
BackgroundT-type calcium channels (TTCCs) mediate calcium influx across the cell membrane. TTCCs regulate numerous physiological processes including cardiac pacemaking and neuronal activity. In addition, they have been implicated in the proliferation, migration and differentiation of tumour tissues. Although the signalling events downstream of TTCC-mediated calcium influx are not fully elucidated, it is clear that variations in the expression of TTCCs promote tumour formation and hinder response to treatment.MethodsWe examined the expression of TTCC genes (all three subtypes; CACNA-1G, CACNA-1H and CACNA-1I) and their prognostic value in three major solid tumours (i.e. gastric, lung and ovarian cancers) via a publicly accessible database.ResultsIn gastric cancer, expression of all the CACNA genes was associated with overall survival (OS) among stage I-IV patients (all pConclusionsAlterations in CACNA gene expression are linked to tumour prognosis. Gastric cancer represents the most promising setting for further evaluation
Band gap opening by two-dimensional manifestation of Peierls instability in graphene
Using first-principles calculations of graphene having high-symmetry
distortion or defects, we investigate band gap opening by chiral symmetry
breaking, or intervalley mixing, in graphene and show an intuitive picture of
understanding the gap opening in terms of local bonding and antibonding
hybridizations. We identify that the gap opening by chiral symmetry breaking in
honeycomb lattices is an ideal two-dimensional (2D) extension of the Peierls
metal-insulator transition in 1D linear lattices. We show that the spontaneous
Kekule distortion, a 2D version of the Peierls distortion, takes place in
biaxially strained graphene, leading to structural failure. We also show that
the gap opening in graphene antidots and armchair nanoribbons, which has been
attributed usually to quantum confinement effects, can be understood with the
chiral symmetry breaking
Biomarker analysis in stage IIIâIV (M0) gastric cancer patients who received curative surgery followed by adjuvant 5-fluorouracil and cisplatin chemotherapy: epidermal growth factor receptor (EGFR) associated with favourable survival
The aim of this study was to analyse the impact of epidermal growth factor receptor (EGFR), thymidylate synthase (TS), dihydropyrimidine dehydrogenase (DPD), thymidine phosphorylase (TP), aurora kinase (ARK) A/B, and excision repair cross-complementing gene 1 (ERCC1) on the efficacy of adjuvant chemotherapy with 5-fluorouracil and cisplatin (FP) after curative gastric resection. Normal and cancer tissue were separately obtained from gastrectomy samples of 153 patients with AJCC stage IIIâIV (M0) who subsequently treated with adjuvant FP chemotherapy. TS, DPD, TP, ERCC1, and ARK proteins were measured by immunohistochemistry (IHC). EGFR expression was investigated using a standardized IHC with the EGFR PharmDx assay. Amplification of EGFR gene was analysed using fluorescent in situ hybridisation (FISH). In multivariate analysis, stage, ratio of positive to removed lymph nodes, and EGFR expression were significant prognostic factors for overall survival. Patients with higher EGFR expression had better overall survival than those with lower expression (relative risk: 0.475 (95% confidence interval, 0.282â0.791, P=0.005). Low EGFR expression might be a predictive marker for relapse in curative resected stage IIIâIV (M0) gastric cancer patients who received adjuvant FP chemotherapy
Atomistic origins of high-performance in hybrid halide perovskite solar cells
The performance of organometallic perovskite solar cells has rapidly
surpassed that of both conventional dye-sensitised and organic photovoltaics.
High power conversion efficiency can be realised in both mesoporous and
thin-film device architectures. We address the origin of this success in the
context of the materials chemistry and physics of the bulk perovskite as
described by electronic structure calculations. In addition to the basic
optoelectronic properties essential for an efficient photovoltaic device
(spectrally suitable band gap, high optical absorption, low carrier effective
masses), the materials are structurally and compositionally flexible. As we
show, hybrid perovskites exhibit spontaneous electric polarisation; we also
suggest ways in which this can be tuned through judicious choice of the organic
cation. The presence of ferroelectric domains will result in internal junctions
that may aid separation of photoexcited electron and hole pairs, and reduction
of recombination through segregation of charge carriers. The combination of
high dielectric constant and low effective mass promotes both Wannier-Mott
exciton separation and effective ionisation of donor and acceptor defects. The
photoferroic effect could be exploited in nanostructured films to generate a
higher open circuit voltage and may contribute to the current-voltage
hysteresis observed in perovskite solar cells.Comment: 6 pages, 5 figure
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