Ion selectivity of the NaK channel investigated by solid-state NMR

Ionenkanäle sind für die zelluläre Homöostase und die elektrische Aktivität in höheren Eukaryoten essentiell. Die vorliegende Arbeit widmet sich dem nichtselektiven Kanal NaK und seinen kaliumselektiven Mutanten. Die Bedeutung von Ionenkanälen wird in Kapitel 1 speziell für die kationenselektive Ionenkanal-Superfamilie diskutiert. Darin werden verschiedene Vertreter dieser Superfamilie untersucht und ihre Strukturen und Ionenselektivität analysiert. In Kapitel 2 wird gezeigt, dass NaK zwei unterschiedliche Selektivitätsfilterkonformationen aufweist, die entweder durch Na+- oder K+-Ionen stabilisiert sind. Unter Verwendung von Festkörper-NMR Spektroskopie und molekulardynamischen Simulationen wurden zwei Ionenleitungswege entdeckt. In Kapitel 3 wurde eine Kristallstruktur von NaK ermittelt, welche die vorhergesagte und für den Seiteneintrittsmechanismus essentielle seitliche Ionenbindungsstelle bestätigt. Die zwei Untereinheiten in der asymmetrischen Einheit zeigen die dynamische Natur der unteren Teile der Transmembranhelices sowie duale Konformationen für die Reste im Selektivitätsfilter. Im Gegensatz zu NaK sind die kaliumselektiven Mutanten ionensensitiver, wie in Kapitel 4 gezeigt: Unter Na+-Bedingungen verliert der gesamte Selektivitätsfilter in den kaliumselektiven Mutanten seine Stabilität. Die stärkere Verbindung zwischen Selektivitätsfilter und der Porenhelix in den kaliumselektiven Mutanten ermöglicht keine nichtselektive Ionenleitung. Unter Verwendung von protonendetektierter Festkörper-NMR wurde die Wechselwirkung zwischen Wassermolekülen und der kaliumselektiven Mutante NaK2K charakterisiert und präsentiert in Kapitel 5. Es wurde gezeigt, dass der Selektivitätsfilter von NaK2K unter physiologischen Bedingungen wasserfrei ist. Diese Ergebnisse werden in Kapitel 6 im Ganzen betrachtet und die verbleibenden Fragen werden erörtert, außerdem wird ein kurzer Ausblick auf die zukünftige Forschung zum Thema Ionenselektivität im NaK-Kanal gegeben.Ion channels are essential to cellular homeostasis and electrical activity in higher eukaryotes. This thesis discusses the non-selective channel NaK and its potassium-selective mutants. The importance of ion channels is discussed in chapter 1 with a special focus on the tetrameric cation-selective ion channel superfamily. Various members of this superfamily are explored and their structures and ion selectivity are analysed. NaK is shown to have two distinct selectivity filter conformations that are stabilized by either Na+ or K+ ions in chapter 2. Using solid-state NMR spectroscopy and molecular dynamics simulations, two ion conduction pathways were discovered. In chapter 3 a crystal structure of NaK was determined that confirms the previously predicted side-entry ion binding site, essential to the side-entry pathway. The two subunits in the asymmetric unit display the dynamical nature of the lower parts of the transmembrane helices as well as dual conformations for residues in the selectivity filter. In contrast to NaK the potassium-selective mutants are more ion sensitive as shown in chapter 4. The entire selectivity filter loses its stability under Na+ conditions for the potassium-selective mutants. The stronger connection of the selectivity filter and the pore helix in the potassium-selective mutants does not allow for non-selective ion conduction. Using proton-detected ssNMR, the interaction between water molecules and the potassium-selective mutant NaK2K was characterized and this is presented in chapter 5. The selectivity filter of NaK2K was shown to be free of water under physiological conditions. These results get put in perspective and the questions which remain are discussed in chapter 6. A short outlook on future research for the topic of ion selectivity in the NaK channel is given

IL-21 receptor antagonist inhibits differentiation of B cells toward plasmablasts upon alloantigen stimulation

Interaction between T follicular helper (Tfh) cells and B cells is complex and involves various pathways, including the production of IL-21 by the Tfh cells. Secretion of IL-21 results in B cell differentiation toward immunoglobulin-producing plasmablasts. In patients after kidney transplantation, the formation of alloantibodies produced by donor antigen-activated B cells are a major cause of organ failure. In this allogeneic response, the role of IL-21-producing Tfh cells that regulate B cell differentiation is unknown. Here, we tested, in an alloantigen-driven setting, whether Tfh cell help signals control B cell differentiation with its dependency on IL-21. Pre-transplantation patient PBMCs were sorted into pure CD4posCXCR5pos Tfh cells and CD19posCD27pos memory B cells and stimulated with donor antigen in the presence or absence of an IL-21 receptor (IL-21R) antagonist (αIL-21R). Donor antigen stimulation initiated expression of the activation markers inducible co-stimulator (ICOS) and programmed death 1 (PD-1) on Tfh cells and a shift toward a mixed Tfh2 and Tfh17 phenotype. The memory B cells underwent class switch recombination and differentiated toward IgM- and IgG-producing plasmablasts. In the presence of αIL-21R, a dose-dependent inhibition of STAT3 phosphorylation was measured in both T and B cells. Blockade of the IL-21R did not have an effect on PD-1 and ICOS expression on Tfh cells but significantly inhibited B cell differentiation. The proportion of plasmablasts decreased by 78% in the presence of αIL-21R. Moreover, s

Protein resonance assignment by BSH‐CP‐based 3D solid‐state NMR experiments: A practical guide

Solid-state NMR (ssNMR) spectroscopy has evolved into a powerful method to obtain structural information and to study the dynamics of proteins at atomic resolution and under physiological conditions. The method is especially well suited to investigate insoluble and noncrystalline proteins that cannot be investigated easily by X-ray crystallography or solution NMR. To allow for detailed analysis of ssNMR data, the assignment of resonances to the protein atoms is essential. For this purpose, a set of three-dimensional (3D) spectra needs to be acquired. Band-selective homo-nuclear cross-polarization (BSH-CP) is an effective method for magnetization transfer between carbonyl carbon (CO) and alpha carbon (CA) atoms, which is an important transfer step in multidimensional ssNMR experiments. This tutorial describes the detailed procedure for the chemical shift assignment of the backbone atoms of 13C–15N-labeled proteins by BSH-CP-based 13C-detected ssNMR experiments. A set of six 3D experiments is used for unambiguous assignment of the protein backbone as well as certain side-chain resonances. The tutorial especially addresses scientists with little experience in the field of ssNMR and provides all the necessary information for protein assignment in an efficient, time-saving approach.European Research Council http://dx.doi.org/10.13039/501100000781Max Planck Society http://dx.doi.org/10.13039/501100004189Leibniz‐Forschungsinstitut für Molekulare PharmakologiePeer Reviewe

Structural Plasticity of the Selectivity Filter in Cation Channels

Ion channels allow for the passage of ions across biological membranes, which is essential for the functioning of a cell. In pore loop channels the selectivity filter (SF) is a conserved sequence that forms a constriction with multiple ion binding sites. It is becoming increasingly clear that there are several conformations and dynamic states of the SF in cation channels. Here we outline specific modes of structural plasticity observed in the SFs of various pore loop channels: disorder, asymmetry, and collapse. We summarize the multiple atomic structures with varying SF conformations as well as asymmetric and more dynamic states that were discovered recently using structural biology, spectroscopic, and computational methods. Overall, we discuss here that structural plasticity within the SF is a key molecular determinant of ion channel gating behavior.Peer Reviewe

T Follicular Helper Cells As a New Target for Immunosuppressive Therapies

Over the past decade, antibody-mediated (humoral) rejection has been recognized as a common cause of graft dysfunction after organ transplantation and an important determinant for graft loss. In humoral alloimmunity, T follicular helper (Tfh) cells play a crucial role, because they help naïve B cells to differentiate into memory B cells and alloantibody-producing plasma cells within germinal centers. In this way, they contribute to the induction of donor-specific antibodies, which are responsible for the humoral immune response to the allograft. In this article, we provide an overview of the current knowledge on the effects of immunosuppressive therapies on Tfh cell development and function, and discuss possible new approaches to influence the activity of Tfh cells. In addition, we discuss the potential use of Tfh cells as a pharmacodynamic biomarker to improve alloimmune-risk stratification and tailoring of immunosuppression to individualize therapy after transplantation

Protein resonance assignment by BSH‐CP‐based 3D solid‐state NMR experiments: A practical guide

Solid-state NMR (ssNMR) spectroscopy has evolved into a powerful method to obtain structural information and to study the dynamics of proteins at atomic resolution and under physiological conditions. The method is especially well suited to investigate insoluble and noncrystalline proteins that cannot be investigated easily by X-ray crystallography or solution NMR. To allow for detailed analysis of ssNMR data, the assignment of resonances to the protein atoms is essential. For this purpose, a set of three-dimensional (3D) spectra needs to be acquired. Band-selective homo-nuclear cross-polarization (BSH-CP) is an effective method for magnetization transfer between carbonyl carbon (CO) and alpha carbon (CA) atoms, which is an important transfer step in multidimensional ssNMR experiments. This tutorial describes the detailed procedure for the chemical shift assignment of the backbone atoms of 13C–15N-labeled proteins by BSH-CP-based 13C-detected ssNMR experiments. A set of six 3D experiments is used for unambiguous assignment of the protein backbone as well as certain side-chain resonances. The tutorial especially addresses scientists with little experience in the field of ssNMR and provides all the necessary information for protein assignment in an efficient, time-saving approach.European Research Council http://dx.doi.org/10.13039/501100000781Max Planck Society http://dx.doi.org/10.13039/501100004189Leibniz‐Forschungsinstitut für Molekulare PharmakologiePeer Reviewe

T follicular helper cells as a new target for immunosuppressive therapies

Over the past decade, antibody-mediated (humoral) rejection has been recognized as a common cause of graft dysfunction after organ transplantation and an important determinant for graft loss. In humoral alloimmunity, T follicular helper (Tfh) cells play a crucial role, because they help naïve B cells to differentiate into memory B cells and alloantibody-producing plasma cells within germinal centers. In this way, they contribute to the induction of donor-specific antibodies, which are responsible for the humoral immune response to the allograft. In this article, we provide an overview of the current knowledge on the effects of immunosuppressive therapies on Tfh cell development and function, and discuss possible new approaches to influence the activity of Tfh cells. In addition, we discuss the potential use of Tfh cells as a pharmacodynamic biomarker to improve alloimmune-risk stratification and tailoring of immunosuppression to individualize therapy after transplantation

Emerin self‐assembly mechanism: role of the LEM domain

International audienceAt the nuclear envelope, the inner nuclear membrane protein emerin contributes to the interface between the nucleoskeleton and the chromatin. Emerin is an essential actor of the nuclear response to a mechanical signal. Genetic defects in emerin cause Emery-Dreifuss muscular dystrophy. It was proposed that emerin oligomerization regulates nucleoskeleton binding , and impaired oligomerization contributes to the loss of function of emerin disease-causing mutants. We here report the first structural characterization of emerin oligomers. We identified an N-terminal emerin region from amino acid 1 to amino acid 132 that is necessary and sufficient for formation of long curvilinear filaments. In emerin monomer, this region contains a globular LEM domain and a fragment that is intrinsically disordered. Solid-state nuclear magnetic resonance analysis identifies the LEM b-fragment as part of the oligomeric structural core. However, the LEM domain alone does not self-assemble into filaments. Additional residues forming a b-structure are observed within the filaments that could correspond to the unstructured region in emerin monomer. We show that the delK37 mutation causing muscular dystrophy triggers LEM domain unfolding and increases emerin self-assembly rate. Similarly, inserting a disulfide bridge that stabilizes the LEM folded state impairs emerin N-terminal region self-assembly, whereas reducing this disulfide bridge triggers self-assembly. We conclude that the LEM domain, responsible for binding to the chromatin protein BAF, undergoes a conformational change during self-assembly of emerin N-terminal region. The consequences of these structural rearrangement and self-assembly events on emerin binding properties are discussed. Abbreviations BAF, barrier-to-autointegration factor; DTT, dithiothreitol; EDMD, Emery-Dreifuss muscular dystrophy; LEM, Lap2-emerin-Man1; LINC, linker of nucleoskeleton and cytoskeleton; NMR, nuclear magnetic resonance; SDS/PAGE, sodium dodecyl sulfate polyacrylamide gel electrophoresis; ThT, thioflavin T