Coupling bacterioplankton populations and environment to community function in coastal temperate waters

Bacterioplankton play a key role in marine waters facilitating processes important for carbon cycling. However, the influence of specific bacterial populations and environmental conditions on bacterioplankton community performance remains unclear. The aim of the present study was to identify drivers of bacterioplankton community functions, taking into account the variability in community composition and environmental conditions over seasons, in two contrasting coastal systems. A Least Absolute Shrinkage and Selection Operator (LASSO) analysis of the biological and chemical data obtained from surface waters over a full year indicated that specific bacterial populations were linked to measured functions. Namely, Synechococcus (Cyanobacteria) was strongly correlated with protease activity. Furthermore, seasons exerted a profound effect on the substrate utilization capacity and composition of the communities. However, the pattern of substrate utilization capacity could not be directly linked to the community dynamics. The overall importance of dissolved organic matter (DOM) parameters in the LASSO models indicate that bacterioplankton respond to the present substrate landscape, with a particular importance of nitrogenous DOM. The analyses exemplifies that high taxonomic resolution can reveal links between individual populations and bulk bacterioplankton functions, and that for some taxa rRNA analyses are a necessary descriptor when attempting to correlate functions with communities. The reconciliation of patterns from two different systems indicates that the identified drivers of bacterioplankton community functions may be of broader relevance in coastal temperate waters

Eutrophication in marine waters: harmonization of MSFD methodological standards at EU level

The Marine Strategy Framework Directive (MSFD) establishes the framework for the protection, conservation and sustainable use of the marine environment at the Union level. Because of its potential negative effects on the marine water quality, eutrophication is one of the criteria assessed under MSFD. This report presents the results of the joint work between JRC and a network of Member States (MS) eutrophication designated experts to assess the level of harmonization in Eutrophication methodological standards and threshold definition at regional and EU level. The information compiled at regional and national level showed that although methodologies are defined already for all the criteria, the degree of harmonization of methodological approaches across MS and regions is in some cases very low. In addition further developments are needed for some regions to agree on common indicators and threshold values. Based on these results the report highlights existing gaps and proposes recommendations to improve the eutrophication assessment framework at EU level.JRC.D.2-Water and Marine Resource

Significant N₂ fixation by heterotrophs, photoheterotrophs and heterocystous cyanobacteria in two temperate estuaries

Nitrogen (N) fixation is fueling planktonic production in a multitude of aquatic environments. In meso- and poly-haline estuaries, however, the contribution of N by pelagic N(2) fixation is believed to be insignificant due to the high input of N from land and the presumed absence of active N(2)-fixing organisms. Here we report N(2) fixation rates, nifH gene composition and nifH gene transcript abundance for key diazotrophic groups over 1 year in two contrasting, temperate, estuarine systems: Roskilde Fjord (RF) and the Great Belt (GB) strait. Annual pelagic N(2) fixation rates averaged 17 and 61 mmol N m(−2) per year at the two sites, respectively. In RF, N(2) fixation was mainly accompanied by transcripts related to heterotrophic (for example, Pseudomonas sp.) and photoheterotrophic bacteria (for example, unicellular diazotrophic cyanobacteria group A). In the GB, the first of two N(2) fixation peaks coincided with a similar nifH-expressing community as in RF, whereas the second peak was synchronous with increased nifH expression by an array of diazotrophs, including heterotrophic organisms as well as the heterocystous cyanobacterium Anabaena. Thus, we show for the first time that significant planktonic N(2) fixation takes place in mesohaline, temperate estuaries and that the importance of heterotrophic, photoheterotrophic and photosynthetic diazotrophs is clearly variable in space and time