Additional file 1 of Depletion of LONP2 unmasks differential requirements for peroxisomal function between cell types and in cholesterol metabolism

Additional file 1. Supplementary figures

Additional file 3 of Depletion of LONP2 unmasks differential requirements for peroxisomal function between cell types and in cholesterol metabolism

Additional file 3. This file contains 3 sheets. The first sheet "corrected abundance" presents the AUC (Area Under the Curve) values of the intensities of the corrected signals for all present compounds in the analyzed samples, obtained following our "data processing" (For more details, seeForest et al. J.Proteome Res. 2018, 17, 3657-3670). The second sheet is "statictical analysis". The third sheet "statistics + abundance" present in one glance the data from the first 2 sheets that are combined

Additional file 2 of Depletion of LONP2 unmasks differential requirements for peroxisomal function between cell types and in cholesterol metabolism

Additional file 2. The file contains the following sheets, preceded with 'U2OS' or 'COS-7' : 1. counts_allgenes = raw read counts for all detected genes. 2. counts_analysedgenes = raw not normalised read counts for genes with at least 4 reads in at least 3 samples in the dataset. This gene list was used for differential expression analysis. 3. Deseq2 = differential expression analysis. 4. transformed reads_vsd or transformed reads_rlog = Deseq2 transformation of reads, used for generating heatmaps. 5. counts_normalised = Deseq2 normalisation of reads, used for generating scatter and others plots of indivual gene expression levels. 6. overlay sheets = overlay of COS-7 and U2OS datasets