Multi-Object Analysis of Volume, Pose, and Shape Using Statistical Discrimination

One goal of statistical shape analysis is the discrimination between two populations of objects. Whereas traditional shape analysis was mostly concerned with studying single objects, analysis of multi-object complexes presents new challenges related to alignment and relative object pose. In this paper, we present a methodology for discriminant analysis of sets multiple shapes. Shapes are represented by sampled medial manifolds including normals to the boundary. Non-Euclidean metrics that describe geodesic distance between sets of sampled representations are used for shape alignment and discrimination. Our choice of discriminant method is the distance weighted discriminant (DWD) because of its generalization ability in high dimensional, low sample size settings. Using an unbiased, soft discrimination score we can associate a statistical hypothesis test with the discrimination results. Furthermore, localization and nature significant differences between populations can be visualized via the average best discriminating axis

Influence of shells on mating behavior in the hermit crab Calcinus tibicen

Populations of the intertidal hermit crab Calcinus tibicen were observed in the laboratory and reproductive behaviors recorded. Of the 218 interactions, 68 resulted in copulation(s). Male and female sizes were positively correlated. Male size affected copulation success in a non-linear fashion. In particular, the largest males did not obtain any copulations. This was largely a consequence of the shell species occupied by large individuals; males in Nerita sp and Cittarium pica shells were unsuccessful in courtship. The ability to execute precopulatory rotation of the female was negatively affected by certain shell types. Repeated pairings of individuals suggested some level of individual recognition within the reproductively active population.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/46890/1/265_2004_Article_BF00293264.pd

Mating success of male hermit crabs in shell generalist and shell specialist species

The reproductive behavior of two species of diogenid hermit crabs was studied in Hawaii. In the shell generalist, Clibanarius zebra , male reproductive success varied little with size, although the largest males were less successful in obtaining copulations than were medium-large males. Male and female size were positively correlated, in successful pairs, thus larger males had the potential to fertilize more eggs when they were successful in obtaining a copulation. Female fecundity in C. zebra was not affected by species of gastropod shell inhabited once female size was taken into account. Male copulatory success was very strongly influenced by the species of gastropod shell inhabited. Males in Trochus or Nerita shells had greatly reduced reproductive success compared to males in Turbo or Nassarius shells. This result was due both to (1) males in Trochus especially dropping and otherwise poorly handling females during precopulatory behavior and (2) females not responding to precopulatory behavior patterns executed by males in Trochus and Nerita . Transferring males from “good” to “bad” shapes of shells and vice versa showed that male success was a function of shell type inhabited and not some correlated feature of the crabs. In the shell specialist, Calcinus seurati , which is found primarily in Nerita shells as an adult, males in Nerita shells were quite successful in obtaining copulations.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/46893/1/265_2004_Article_BF00302928.pd

A Test of Temporal Variation in Risk and Food Stimuli on Behavioral Tradeoffs in the Rusty Crayfish, Orconectes rusticus : Risk Allocation and Stimulus Degradation

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/72936/1/j.1439-0310.2006.01156.x.pd

Unique Structural Modifications Are Present in the Lipopolysaccharide from Colistin-Resistant Strains of \u3ci\u3eAcinetobacter baumannii\u3c/i\u3e

Acinetobacter baumannii is a nosocomial opportunistic pathogen that can cause severe infections, including hospital-acquired pneumonia, wound infections, and sepsis. Multidrug-resistant (MDR) strains are prevalent, further complicating patient treatment. Due to the increase in MDR strains, the cationic antimicrobial peptide colistin has been used to treat A. baumannii infections. Colistin-resistant strains of A. baumannii with alterations to the lipid A component of lipopolysaccharide (LPS) have been reported; specifically, the lipid A structure was shown to be hepta-acylated with a phosphoethanolamine (pEtN) modification present on one of the terminal phosphate residues. Using a tandem mass spectrometry platform, we provide definitive evidence that the lipid A isolated from colistin-resistant A. baumannii MAC204 LPS contains a novel structure corresponding to a diphosphoryl hepta-acylated lipid A structure with both pEtN and galactosamine (GalN) modifications. To correlate our structural studies with clinically relevant samples, we characterized colistin-susceptible and -resistant isolates obtained from patients. These results demonstrated that the clinical colistin-resistant isolate had the same pEtN and GalN modifications as those seen in the laboratory-adapted A. baumannii strain MAC204. In summary, this work has shown complete structure characterization including the accurate assignment of acylation, phosphorylation, and glycosylation of lipid A from A. baumannii, which are important for resistance to colistin

Brain structure in sagittal craniosynostosis

Craniosynostosis, the premature fusion of one or more cranial sutures, leads to grossly abnormal head shapes and pressure elevations within the brain caused by these deformities. To date, accepted treatments for craniosynostosis involve improving surgical skull shape aesthetics. However, the relationship between improved head shape and brain structure after surgery has not been yet established. Typically, clinical standard care involves the collection of diagnostic medical computed tomography (CT) imaging to evaluate the fused sutures and plan the surgical treatment. CT is known to provide very good reconstructions of the hard tissues in the skull but it fails to acquire good soft brain tissue contrast. This study intends to use magnetic resonance imaging to evaluate brain structure in a small dataset of sagittal craniosynostosis patients and thus quantify the effects of surgical intervention in overall brain structure. Very importantly, these effects are to be contrasted with normative shape, volume and brain structure databases. The work presented here wants to address gaps in clinical knowledge in craniosynostosis focusing on understanding the changes in brain volume and shape secondary to surgery, and compare those with normally developing children. This initial pilot study has the potential to add significant quality to the surgical care of a vulnerable patient population in whom we currently have limited understanding of brain developmental outcomes

Infant Cognitive Scores Prediction With Multi-stream Attention-based Temporal Path Signature Features

There is stunning rapid development of human brains in the first year of life. Some studies have revealed the tight connection between cognition skills and cortical morphology in this period. Nonetheless, it is still a great challenge to predict cognitive scores using brain morphological features, given issues like small sample size and missing data in longitudinal studies. In this work, for the first time, we introduce the path signature method to explore hidden analytical and geometric properties of longitudinal cortical morphology features. A novel BrainPSNet is proposed with a differentiable temporal path signature layer to produce informative representations of different time points and various temporal granules. Further, a two-stream neural network is included to combine groups of raw features and path signature features for predicting the cognitive score. More importantly, considering different influences of each brain region on the cognitive function, we design a learning-based attention mask generator to automatically weight regions correspondingly. Experiments are conducted on an in-house longitudinal dataset. By comparing with several recent algorithms, the proposed method achieves the state-of-the-art performance. The relationship between morphological features and cognitive abilities is also analyzed

A Novel Method for High-Dimensional Anatomical Mapping of Extra-Axial Cerebrospinal Fluid: Application to the Infant Brain

Cerebrospinal fluid (CSF) plays an essential role in early postnatal brain development. Extra-axial CSF (EA-CSF) volume, which is characterized by CSF in the subarachnoid space surrounding the brain, is a promising marker in the early detection of young children at risk for neurodevelopmental disorders. Previous studies have focused on global EA-CSF volume across the entire dorsal extent of the brain, and not regionally-specific EA-CSF measurements, because no tools were previously available for extracting local EA-CSF measures suitable for localized cortical surface analysis. In this paper, we propose a novel framework for the localized, cortical surface-based analysis of EA-CSF. The proposed processing framework combines probabilistic brain tissue segmentation, cortical surface reconstruction, and streamline-based local EA-CSF quantification. The quantitative analysis of local EA-CSF was applied to a dataset of typically developing infants with longitudinal MRI scans from 6 to 24 months of age. There was a high degree of consistency in the spatial patterns of local EA-CSF across age using the proposed methods. Statistical analysis of local EA-CSF revealed several novel findings: several regions of the cerebral cortex showed reductions in EA-CSF from 6 to 24 months of age, and specific regions showed higher local EA-CSF in males compared to females. These age-, sex-, and anatomically-specific patterns of local EA-CSF would not have been observed if only a global EA-CSF measure were utilized. The proposed methods are integrated into a freely available, open-source, cross-platform, user-friendly software tool, allowing neuroimaging labs to quantify local extra-axial CSF in their neuroimaging studies to investigate its role in typical and atypical brain development

A Gene Expression Signature of Invasive Potential in Metastatic Melanoma Cells

BACKGROUND: We are investigating the molecular basis of melanoma by defining genomic characteristics that correlate with tumour phenotype in a novel panel of metastatic melanoma cell lines. The aim of this study is to identify new prognostic markers and therapeutic targets that might aid clinical cancer diagnosis and management. PRINCIPAL FINDINGS: Global transcript profiling identified a signature featuring decreased expression of developmental and lineage specification genes including MITF, EDNRB, DCT, and TYR, and increased expression of genes involved in interaction with the extracellular environment, such as PLAUR, VCAN, and HIF1a. Migration assays showed that the gene signature correlated with the invasive potential of the cell lines, and external validation by using publicly available data indicated that tumours with the invasive gene signature were less melanocytic and may be more aggressive. The invasion signature could be detected in both primary and metastatic tumours suggesting that gene expression conferring increased invasive potential in melanoma may occur independently of tumour stage. CONCLUSIONS: Our data supports the hypothesis that differential developmental gene expression may drive invasive potential in metastatic melanoma, and that melanoma heterogeneity may be explained by the differing capacity of melanoma cells to both withstand decreased expression of lineage specification genes and to respond to the tumour microenvironment. The invasion signature may provide new possibilities for predicting which primary tumours are more likely to metastasize, and which metastatic tumours might show a more aggressive clinical course

Non-visual functions of crustacean eyestalk ganglia

Ablation experiments demonstrated that in several crustacean groups, the proximal eyestalk ganglia are important in a variety of behavior patterns: 1. Chemical elicitation of feeding via the antennules is altered in lobsters, hermit crabs, and some brachyuran crabs by bilateral eyestalk ablation; the ablation of one antennule and the contralateral eyestalk is effective in lobsters and hermit crabs;Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47106/1/359_2005_Article_BF01245153.pd