Phytochrome A mediates blue-light enhancement of second-positive phototropism in Arabidopsis

Hypocotyl phototropism of etiolated Arabidopsis seedlings is primarily mediated by the blue-light receptor kinase phototropin 1 (phot1). Phot1-mediated curvature to continuous unilateral blue light irradiation (0.5 µmol m-2 s-1) is enhanced by overhead pre-treatment with red light (20 µmol m-2 s-1 for 15 min) through the action of phytochrome (phyA). Here, we show that pre-treatment with blue light is equally as effective in eliciting phototropic enhancement and is dependent on phyA. Although blue pre-treatment was sufficient to activate early phot1 signalling events, phot1 autophosphorylation in vivo was not found to be saturated, as assessed by subsequently measuring phot1 kinase activity in vitro. However, enhancement effects to red and blue pre-treatment were not observed at higher intensities of phototropic stimulation (10 µmol m-2 s-1). Phototropic enhancement to red and blue pre-treatments to 0.5 µmol m-2 s-1 unilateral blue light irradiation was also lacking in transgenic Arabidopsis where PHOT1 expression was restricted to the epidermis. Together, these findings indicate that phyA-mediated effects on phot1 signalling are restricted to low intensities of phototropic stimulation and originate from tissues other than the epidermis

Minimum distribution of subsea ice-bearing permafrost on the U.S. Beaufort Sea continental shelf

This paper is not subject to U.S. copyright. The definitive version was published in Geophysical Research Letters 39 (2012): L15501, doi:10.1029/2012GL052222.Starting in Late Pleistocene time (~19 ka), sea level rise inundated coastal zones worldwide. On some parts of the present-day circum-Arctic continental shelf, this led to flooding and thawing of formerly subaerial permafrost and probable dissociation of associated gas hydrates. Relict permafrost has never been systematically mapped along the 700-km-long U.S. Beaufort Sea continental shelf and is often assumed to extend to ~120 m water depth, the approximate amount of sea level rise since the Late Pleistocene. Here, 5,000 km of multichannel seismic (MCS) data acquired between 1977 and 1992 were examined for high-velocity (>2.3 km s−1) refractions consistent with ice-bearing, coarse-grained sediments. Permafrost refractions were identified along <5% of the tracklines at depths of ~5 to 470 m below the seafloor. The resulting map reveals the minimum extent of subsea ice-bearing permafrost, which does not extend seaward of 30 km offshore or beyond the 20 m isobath.This research was sponsored by DOE-USGS Interagency Agreement DE-FE0002911. L.B. was supported by a DOE NETL/NRC Methane Hydrate Fellowship under DE-FC26-05NT42248

Waves in Radial Gravity Using Magnetic Fluid

We are beginning laboratory experiments using magnetically active ferrofluids to study surface waves in novel geometries. Terrestrial gravity is eliminated from the dynamics, and the magnetic body force felt by ferrofluid in the presence of a magnetic field gradient is used to create a geopotential field which is a section of or an entire sphere or cylinder. New optical, electromagnetic and ultrasonic diagnostic techniques are under development to initially study capillary-gravity wave propagation and interaction in such geometries

Widespread gas hydrate instability on the upper U.S. Beaufort margin

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Solid Earth 119 (2014): 8594–8609, doi:10.1002/2014JB011290.The most climate-sensitive methane hydrate deposits occur on upper continental slopes at depths close to the minimum pressure and maximum temperature for gas hydrate stability. At these water depths, small perturbations in intermediate ocean water temperatures can lead to gas hydrate dissociation. The Arctic Ocean has experienced more dramatic warming than lower latitudes, but observational data have not been used to study the interplay between upper slope gas hydrates and warming ocean waters. Here we use (a) legacy seismic data that constrain upper slope gas hydrate distributions on the U.S. Beaufort Sea margin, (b) Alaskan North Slope borehole data and offshore thermal gradients determined from gas hydrate stability zone thickness to infer regional heat flow, and (c) 1088 direct measurements to characterize multidecadal intermediate ocean warming in the U.S. Beaufort Sea. Combining these data with a three-dimensional thermal model shows that the observed gas hydrate stability zone is too deep by 100 to 250 m. The disparity can be partially attributed to several processes, but the most important is the reequilibration (thinning) of gas hydrates in response to significant (~0.5°C at 2σ certainty) warming of intermediate ocean temperatures over 39 years in a depth range that brackets the upper slope extent of the gas hydrate stability zone. Even in the absence of additional ocean warming, 0.44 to 2.2 Gt of methane could be released from reequilibrating gas hydrates into the sediments underlying an area of ~5–7.5 × 103 km2 on the U.S. Beaufort Sea upper slope during the next century.This work was supported by the U.S. Department of Energy (DOE), grant DE-FE0010180 to SMU and a USGS-DOE interagency agreement DE-FE0005806.2015-06-0

Subsea ice-bearing permafrost on the U.S. Beaufort Margin : 2. Borehole constraints

Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 17 (2016): 4333–4353, doi:10.1002/2016GC006582.Borehole logging data from legacy wells directly constrain the contemporary distribution of subsea permafrost in the sedimentary section at discrete locations on the U.S. Beaufort Margin and complement recent regional analyses of exploration seismic data to delineate the permafrost's offshore extent. Most usable borehole data were acquired on a ∼500 km stretch of the margin and within 30 km of the contemporary coastline from north of Lake Teshekpuk to nearly the U.S.-Canada border. Relying primarily on deep resistivity logs that should be largely unaffected by drilling fluids and hole conditions, the analysis reveals the persistence of several hundred vertical meters of ice-bonded permafrost in nearshore wells near Prudhoe Bay and Foggy Island Bay, with less permafrost detected to the east and west. Permafrost is inferred beneath many barrier islands and in some nearshore and lagoonal (back-barrier) wells. The analysis of borehole logs confirms the offshore pattern of ice-bearing subsea permafrost distribution determined based on regional seismic analyses and reveals that ice content generally diminishes with distance from the coastline. Lacking better well distribution, it is not possible to determine the absolute seaward extent of ice-bearing permafrost, nor the distribution of permafrost beneath the present-day continental shelf at the end of the Pleistocene. However, the recovery of gas hydrate from an outer shelf well (Belcher) and previous delineation of a log signature possibly indicating gas hydrate in an inner shelf well (Hammerhead 2) imply that permafrost may once have extended across much of the shelf offshore Camden Bay.2017-05-0

Subsea ice-bearing permafrost on the U.S. Beaufort Margin : 1. Minimum seaward extent defined from multichannel seismic reflection data

Author Posting. © American Geophysical Union, 2016. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry, Geophysics, Geosystems 17 (2016): 4354–4365, doi:10.1002/2016GC006584.Subsea ice-bearing permafrost (IBPF) and associated gas hydrate in the Arctic have been subject to a warming climate and saline intrusion since the last transgression at the end of the Pleistocene. The consequent degradation of IBPF is potentially associated with significant degassing of dissociating gas hydrate deposits. Previous studies interpreted the distribution of subsea permafrost on the U.S. Beaufort continental shelf based on geographically sparse data sets and modeling of expected thermal history. The most cited work projects subsea permafrost to the shelf edge (∼100 m isobath). This study uses a compilation of stacking velocity analyses from ∼100,000 line-km of industry-collected multichannel seismic reflection data acquired over 57,000 km2 of the U.S. Beaufort shelf to delineate continuous subsea IBPF. Gridded average velocities of the uppermost 750 ms two-way travel time range from 1475 to 3110 m s−1. The monotonic, cross-shore pattern in velocity distribution suggests that the seaward extent of continuous IBPF is within 37 km of the modern shoreline at water depths < 25 m. These interpretations corroborate recent Beaufort seismic refraction studies and provide the best, margin-scale evidence that continuous subsea IBPF does not currently extend to the northern limits of the continental shelf.DOE NETL/NRC Methane Hydrate Fellowship Grant Number: DE-FC26-05NT42248; USGS–DOE Interagency Agreements Grant Number: DE-FE000291 and 00234952017-05-0

Net Farm Income Impacts of Alternative Risk Management Bills

The impacts of the bills are measured against the FAPRI January 1999 baseline which may be found at http://hdl.handle.net/10355/3318At the request of Senator Richard Lugar, Chairman of the Committee on Agriculture, Nutrition and Forestry, FAPRI has analyzed impacts of two alternative risk management proposals. The first proposal is the Farmers' Risk Management Act of 1999, sponsored by Senator Lugar (IN) and co-sponsored by Senators McConnell (KY), Fitzgerald (IL), and Helms (NC). The second proposal is the Risk Management for the 21st Century Act, put forth by Senator Roberts (KS) and co-sponsored by Senator Kerrey (NE) and others

Analysis of Risk Management Proposals

An earlier analysis which concentrated on the aggregate net farm income and government outlay impacts may be found at http://hdl.handle.net/10355/3318At the request of several members of the Committee on Agriculture, Nutrition, and Forestry of the Senate, FAPRI has continued to analyze the impacts of two alternative risk management proposals. The proposals are the Farmers' Risk Management Act of 1999 (S. 1666) and the Risk Management for the 21st Century Act (S. 1580)

CAP Reform and the WTO: Potential Impacts on EU Agriculture

Selected Paper prepared for presentation at the American Agricultural Economics Association Annual Meeting, Denver, Colorado.In 2003 an agreement was finalized to instigate arguably the most significant reform of the European Union's (EU) Common Agricultural Policy (CAP) since its inception. In the Luxembourg Agreement many of the direct payments that have been linked to production are decoupled and instead provided in the form of a land-based payment. The reforms did not include any significant changes to either EU border support or the ability of the EU to utilize export subsidies that have been widely criticized by other nations. Even though the reforms do not directly address trade in agricultural products it is argued that World Trade Organization (WTO) concerns played a significant role in the designs of the reforms. In this paper an analysis of the Luxembourg reforms and the European proposal for agriculture under the WTO is presented. The results are used as the basis for a discussion of the interaction of the WTO and CAP reform and the implications for the agricultural sector in the EU