Molecular systematics of the cotton root rot pathogen, Phymatotrichopsis omnivora

Cotton root rot is an important soilborne disease of cotton and numerous dicot plants in the south-western United States and Mexico. The causal organism, Phymatotrichopsis omnivora (= Phymatotrichum omnivorum), is known only as an asexual, holoanamorphic (mitosporic) fungus, and produces conidia resembling those of Botrytis. Although the corticoid basidiomycetes Phanerochaete omnivora (Polyporales) and Sistotrema brinkmannii (Cantharellales; both Agaricomycetes) have been suggested as teleomorphs of Phymatotrichopsis omnivora, phylogenetic analyses of nuclear small- and large-subunit ribosomal DNA and subunit 2 of RNA polymerase II from multiple isolates indicate that it is neither a basidiomycete nor closely related to other species of Botrytis (Sclerotiniaceae, Leotiomycetes). Phymatotrichopsis omnivora is a member of the family Rhizinaceae, Pezizales (Ascomycota: Pezizomycetes) allied to Psilopezia and Rhizina

Influence of chicory roots /Cichorium intybus L) on boar taint in entire male pigs and female pigs

It is known that pure inulin a fructooligosaccharide extracted from chicory roots can: – reduce boar taint (skatole in backfat and blood) – reduce parasite infection levels when added to specially composed experimental diets • However, the entire chicory roots may, in comparison to inulin: – reduce boar taint more effectively – improve the taste of cooked meat from both male and female pigs – be more effective against parasites when added to normal diet types – contain secondary metabolites that add to the effect of the inulin – be a cheaper solutio

Developing a total replacement cost index for suburban office projects

Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Architecture, 2006.This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections.Includes bibliographical references (leaves 78-79).Understanding the components of replacement costs for office developments, and how these components combine to create total development costs is essential for success in office real estate development. Surprisingly, the term "replacement cost" does not enjoy a standard definition in the industry. This study explores the components of total replacement cost, and ultimately creates a market-level index industry professionals can utilize when creating or reviewing office development budgets.by David John Hansen.S.M

Persistence of a particle in the Matheron-de Marsily velocity field

We show that the longitudinal position $x(t)$ of a particle in a $(d+1)$-dimensional layered random velocity field (the Matheron-de Marsily model) can be identified as a fractional Brownian motion (fBm) characterized by a variable Hurst exponent $H(d)=1-d/4$ for $d2$. The fBm becomes marginal at $d=2$. Moreover, using the known first-passage properties of fBm we prove analytically that the disorder averaged persistence (the probability of no zero crossing of the process $x(t)$ upto time $t$) has a power law decay for large $t$ with an exponent $\theta=d/4$ for $d<2$ and $\theta=1/2$ for $d\geq 2$ (with logarithmic correction at $d=2$), results that were earlier derived by Redner based on heuristic arguments and supported by numerical simulations (S. Redner, Phys. Rev. E {\bf 56}, 4967 (1997)).Comment: 4 pages Revtex, 1 .eps figure included, to appear in PRE Rapid Communicatio

Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua

Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts

Use of antihistamine medications during early pregnancy and selected birth defects: The National Birth Defects Prevention Study, 1997–2011

Background: It is estimated that approximately 10–15% of pregnant women report antihistamine use during pregnancy. Although antihistamines are generally considered safe during pregnancy, results from published studies are inconsistent. Methods: Using a case–control study design we analyzed 41,148 pregnancies (30,091 cases and 11,057 controls) from the National Birth Defects Prevention Study (1997–2011). Logistic regression models were used to estimate odds ratios (OR) and 95% confidence intervals for 64 birth defect groupings in relation to early pregnancy exposure to 14 distinct antihistamines. Models were adjusted for maternal age, race, parity, education level, prenatal care, folic acid use, smoking and alcohol use, and study site. Results: Approximately 13% of cases and controls were exposed to an antihistamine during early pregnancy. Analyses were restricted to those defects where more than five cases were exposed to the antihistamine of interest, generating 340 analyses which yielded 20 (5.9%) significant positive associations (adjusted ORs ranging from 1.21 to 4.34). Conclusions: Only a few of our findings were consistent with previous studies. There is a lack of strong evidence to conclude that birth defects are associated with exposure to antihistamines during early pregnancy

Tritium Beta Decay, Neutrino Mass Matrices and Interactions Beyond the Standard Model

The interference of charge-changing interactions, weaker than the V-A Standard Model (SM) interaction and having a different Lorentz structure, with that SM interaction, can, in principle, produce effects near the end point of the Tritium beta decay spectrum which are of a different character from those produced by the purely kinematic effect of neutrino mass expected in the simplest extension of the SM. We show that the existence of more than one mass eigenstate can lead to interference effects at the end point that are stronger than those occurring over the entire spectrum. We discuss these effects both for the special case of Dirac neutrinos and the more general case of Majorana neutrinos and show that, for the present precision of the experiments, one formula should suffice to express the interference effects in all cases. Implications for "sterile" neutrinos are noted.Comment: 32 pages, LaTeX, 6 figures, PostScript; full discussion and changes in notation from Phys. Lett. B440 (1998) 89, nucl-th/9807057; submitted to Phys. Rev.

Semi-Analytic Stellar Structure in Scalar-Tensor Gravity

Precision tests of gravity can be used to constrain the properties of hypothetical very light scalar fields, but these tests depend crucially on how macroscopic astrophysical objects couple to the new scalar field. We develop quasi-analytic methods for solving the equations of stellar structure using scalar-tensor gravity, with the goal of seeing how stellar properties depend on assumptions made about the scalar coupling at a microscopic level. We illustrate these methods by applying them to Brans-Dicke scalars, and their generalization in which the scalar-matter coupling is a weak function of the scalar field. The four observable parameters that characterize the fields external to a spherically symmetric star (the stellar radius, R, mass, M, scalar `charge', Q, and the scalar's asymptotic value, phi_infty) are subject to two relations because of the matching to the interior solution, generalizing the usual mass-radius, M(R), relation of General Relativity. We identify how these relations depend on the microscopic scalar couplings, agreeing with earlier workers when comparisons are possible. Explicit analytical solutions are obtained for the instructive toy model of constant-density stars, whose properties we compare to more realistic equations of state for neutron star models.Comment: 39 pages, 9 figure