Herbaceous Legume Encroachment Reduces Grass Productivity and Density in Arid Rangelands

Worldwide savannas and arid grasslands are mainly used for livestock grazing, providing livelihood to over a billion people. While normally dominated by perennial C-4 grasses, these rangelands are increasingly affected by the massive spread of native, mainly woody legumes. The consequences are often a repression of grass cover and productivity, leading to a reduced carrying capacity. While such encroachment by woody plants has been extensively researched, studies on similar processes involving herbaceous species are rare. We studied the impact of a sustained and massive spread of the native herbaceous legume Crotalaria podocarpa in Namibia's escarpment region on the locally dominant fodder grasses Stipagrostis ciliata and Stipagrostis uniplumis. We measured tussock densities, biomass production of individual tussocks and tussock dormancy state of Stipagrostis on ten 10 m x 10 m plots affected and ten similarly-sized plots unaffected by C. podocarpa over eight consecutive years and under different seasonal rainfalls and estimated the potential relative productivity of the land. We found the percentage of active Stipagrostis tussocks and the biomass production of individual tussocks to increase asymptotically with higher seasonal rainfall reaching a maximum around 300 mm while the land's relative productivity under average local rainfall conditions reached only 40% of its potential. Crotalaria podocarpa encroachment had no effect on the proportion of productive grass tussocks, but reduced he productivity of individual Stipagrostis tussocks by a third. This effect of C. podocarpa on grass productivity was immediate and direct and was not compensated for by above-average rainfall. Besides this immediate effect, over time, the density of grass tussocks declined by more than 50% in areas encroached by C. podocarpa further and lastingly reducing the lands carrying capacity. The effects of C. podocarpa on grass productivity hereby resemble those of woody encroachers. Therefore, against the background of global change, the spread of herbaceous legumes and the underlying patterns needs to be further investigated to develop adequate counter measures for a sustainable land use.DF

A Search for Ionized Gas in the Draco and Ursa Minor Dwarf Spheroidal Galaxies

The Wisconsin H Alpha Mapper has been used to set the first deep upper limits on the intensity of diffuse H alpha emission from warm ionized gas in the Local Group dwarf spheroidal galaxies (dSphs) Draco and Ursa Minor. Assuming a velocity dispersion of 15 km/s for the ionized gas, we set limits for the H alpha intensity of less or equal to 0.024 Rayleighs and less or equal to 0.021 Rayleighs for the Draco and Ursa Minor dSphs, respectively, averaged over our 1 degree circular beam. Adopting a simple model for the ionized interstellar medium, these limits translate to upper bounds on the mass of ionized gas of approximately less than 10% of the stellar mass, or approximately 10 times the upper limits for the mass of neutral hydrogen. Note that the Draco and Ursa Minor dSphs could contain substantial amounts of interstellar gas, equivalent to all of the gas injected by dying stars since the end of their main star forming episodes more than 8 Gyr in the past, without violating these limits on the mass of ionized gas.Comment: 10 pages, 2 figures, AASTeX two-column format. Accepted for publication in The Astrophysical Journa

Are current case-finding methods under-diagnosing tuberculosis among women in Myanmar? An analysis of operational data from Yangon and the nationwide prevalence survey.

BACKGROUND: Although there is a large increase in investment for tuberculosis control in Myanmar, there are few operational analyses to inform policies. Only 34% of nationally reported cases are from women. In this study, we investigate sex differences in tuberculosis diagnoses in Myanmar in order to identify potential health systems barriers that may be driving lower tuberculosis case finding among women. METHODS: From October 2014 to March 2015, we systematically collected data on all new adult smear positive tuberculosis cases in ten township health centres across Yangon, the largest city in Myanmar, to produce an electronic tuberculosis database. We conducted a descriptive cross-sectional analysis of sex differences in tuberculosis diagnoses at the township health centres. We also analysed national prevalence survey data to calculate additional case finding in men and women by using sputum culture when smear microscopy was negative, and estimated the sex-specific impact of using a more sensitive diagnostic tool at township health centres. RESULTS: Overall, only 514 (30%) out of 1371 new smear positive tuberculosis patients diagnosed at the township health centres were female. The proportion of female patients varied by township (from 21% to 37%, p = 0.0172), month of diagnosis (37% in February 2015 and 23% in March 2015 p = 0.0004) and age group (26% in 25-64 years and 49% in 18-25 years, p < 0.0001). Smear microscopy grading of sputum specimens was not substantially different between sexes. The prevalence survey analysis indicated that the use of a more sensitive diagnostic tool could result in the proportion of females diagnosed at township health centres increasing to 36% from 30%. CONCLUSIONS: Our study, which is the first to systematically compile and analyse routine operational data from tuberculosis diagnostic centres in Myanmar, found that substantially fewer women than men were diagnosed in all study townships. The sex ratio of newly diagnosed cases varied by age group, month of diagnosis and township of diagnosis. Low sensitivity of tuberculosis diagnosis may lead to a potential under-diagnosis of tuberculosis among women

OcculterCut: A comprehensive survey of AT-rich regions in fungal genomes.

We present a novel method to measure the local GC-content bias in genomes and a survey of published fungal species. The method, enacted as "OcculterCut" (https://sourceforge.net/projects/occultercut), identified species containing distinct AT-rich regions. In most fungal taxa, AT-rich regions are a signature of repeat-induced point mutation (RIP), which targets repetitive DNA and decreases GC-content though the conversion of cytosine to thymine bases. RIP has in turn been identified as a driver of fungal genome evolution, as RIP mutations can also occur in single-copy genes neighbouring repeat-rich regions. Over time RIP perpetuates 'two speeds' of gene evolution in the GC-equilibrated and AT-rich regions of fungal genomes. In this study, genomes showing evidence of this process are found to be common, particularly among the Pezizomycotina. Further analysis highlighted differences in amino acid composition and putative functions of genes from these regions, supporting the hypothesis that these regions play an important role in fungal evolution. OcculterCut can also be used to identify genes undergoing RIP-assisted diversifying selection, such as small, secreted effector proteins that mediate host-microbe disease interactions

The Three-Dimensional Mass Distribution in NGC 1700

A variety of modeling techniques is used with surface photometry from the literature and recently acquired high-accuracy stellar kinematic data to constrain the three-dimensional mass distribution in the luminous cuspy elliptical galaxy NGC 1700. First, we model the radial velocity field and photometry, and, using a Bayesian technique, estimate the triaxiality T and short-to-long axis ratio c in five concentric annuli between approximately 1 and 3 effective radii. The results are completely consistent with T being constant inside about 2.5 r_e (36 arcsec; 6.7/h kpc). Adding an assumption of constant T as prior information gives an upper limit of T < 0.16 (95% confidence); this relaxes to T < 0.22 if it is also assumed that there is perfect alignment between the angular momentum and the galaxy's intrinsic short axis. Near axisymmetry permits us then to use axisymmetric models to constrain the radial mass profile. Using the Jeans (moment) equations, we demonstrate that 2-integral, constant-M/L models cannot fit the data; but a 2-integral model in which the cumulative enclosed M/L increases by a factor of roughly 2 from the center out to 12/h kpc can. Three-integral models constructed by quadratic programming show that, in fact, no constant-M/L model is consistent with the kinematics. Anisotropic 3-integral models with variable M/L, while not uniquely establishing a minimum acceptable halo mass, imply, as do the moment models, a cumulative M/L_B approximately 10 h at 12/h kpc. We conclude that NGC 1700 represents the best stellar dynamical evidence to date for dark matter in elliptical galaxies.Comment: 26 pages, Latex, AASTeX v4.0, with 11 eps figures. To appear in The Astronomical Journal, January 1999. Figures 1 and 3 are color but are readable in b/

Proteomic analysis of Rhizoctonia solani identifies infection-specific, redox associated proteins and insight into adaptation to different plant hosts

Rhizoctonia solani is an important root infecting pathogen of a range of food staples worldwide including wheat, rice, maize, soybean, potato and others. Conventional resistance breeding strategies are hindered by the absence of tractable genetic resistance in any crop host. Understanding the biology and pathogenicity mechanisms of this fungus is important for addressing these disease issues, however, little is known about how R. solani causes disease. This study capitalises on recent genomic studies by applying mass spectrometry based proteomics to identify soluble, membrane-bound and culture filtrate proteins produced under wheat infection and vegetative growth conditions. Many of the proteins found in the culture filtrate had predicted functions relating to modification of the plant cell wall, a major activity required for pathogenesis on the plant host, including a number found only under infection conditions. Other infection related proteins included a high proportion of proteins with redox associated functions and many novel proteins without functional classification. The majority of infection only proteins tested were confirmed to show transcript up-regulation during infection including a thaumatin which increased susceptibility to R. solani when expressed in Nicotiana benthamiana. In addition, analysis of expression during infection of different plant hosts highlighted how the infection strategy of this broad host range pathogen can be adapted to the particular host being encountered. Data are available via ProteomeXchange with identifier PXD002806

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth

© 2016. Rhizoctonia solani is an important root infecting pathogen of a range of food staples worldwide including wheat, rice, maize, soybean, potato, legumes and others. Conventional resistance breeding strategies are hindered by the absence of tractable genetic resistance in any crop host. Understanding the biology and pathogenicity mechanisms of this fungus is important for addressing these disease issues, however, little is known about how R. solani causes disease. The data described in this article is derived from applying mass spectrometry based proteomics to identify soluble, membrane-bound and culture filtrate proteins produced under wheat infection and vegetative growth conditions. Comparisons of the data for sample types in this set will be useful to identify metabolic pathway changes as the fungus switches from saprophytic to a pathogenic lifestyle or pathogenicity related proteins contributing to the ability to cause disease on wheat. The data set is deposited in the PRIDE archive under identifier PRIDE: PXD002806

Buoyant Venus station mission feasibility study for 1972 and 1973 launch opportunities. Volume 3 - Configuration definition. Part 2 - Appendixes Final report

Buoyant Venus station mission study for 1972 - 1973 launch period - backup data including atmospheric models, heat shield requirements, etc