Assessment of the condition of the Swan-Canning Estuary in 2015, based on the Fish Community Indices of estuarine condition. Final report to the Department of Parks and Wildlife

This report, commissioned by the Department of Parks and Wildlife, describes the monitoring and evaluation of fish communities in the Swan Canning Riverpark during 2015 and applies the Fish Community Indices (FCI) that have been developed in recent years as a measure of the ecological condition of the Swan Canning Estuary. These indices, developed for the shallow, nearshore waters of the estuary and also for its deeper, offshore waters, integrate information on various biological variables (metrics), each of which quantifies an aspect of the structure and/or function of estuarine fish communities and responds to a range of stressors affecting the ecosystem. Fish communities were sampled using different nets at six nearshore and six offshore sites in each of four management zones of the estuary (Lower Swan Canning Estuary, LSCE; Canning Estuary, CE; Middle Swan Estuary, MSE; Upper Swan Estuary, USE) during summer and autumn of 2015. As many fish as possible were returned to the water alive after they had been identified and counted. The resulting data on the abundances of each fish species from each sample were used to calculate a Fish Community Index score (0-100). These index scores were then compared to established scoring thresholds to determine ecological condition grades (A-E) for each zone and for the estuary as a whole, based on the composition of the fish community

Evaluating the effects of artificial oxygenation and hypoxia on biota in the Upper Swan Estuary: Final report

In 2010, the Swan River Trust commissioned Murdoch University to evaluate the effects of artificial oxygenation on the benthic macroinvertebrate (BMI) fauna of the Upper Swan Estuary (USE). The project involved the collection of BMIs monthly between January 2010 and December 2011, at five locations in the USE between Ron Courtney Island and just upstream of Middle Swan Bridge (i.e. the Jane Brook confluence). Specifically, the project had two components; 1) to describe any spatial and/or temporal patterns in the BMI community during eight consecutive seasons in 2010 and 2011 and 2) to assess the ecological and management implications of the findings, with specific reference to the effects of hypoxia (low dissolved oxygen) and of the artificial oxygenation program

Interdecadal changes in the community, population and individual levels of the fish fauna of an extensively modified estuary

This study examined inter-period changes over two to three decades in the fish fauna of an urbanized estuary experiencing rapid population growth and a drying climate (Swan-Canning Estuary, Western Australia). Responses were compared at the fish community level (species composition; 1978-2009 in the shallows and 1993-2009 in deeper waters) and at the population and individual levels of an estuarine indicator species, black bream Acanthopagrus butcheri (biomass-abundance and per capita mass at age, respectively; 1993-2009). All three levels showed distinct shifts from earlier to later periods, but their patterns, sensitivity and breadth differed. Community composition changed markedly in the shallows of the lower-middle estuary between the late 1970s and all later periods and moderately between more disparate periods from 1995 to 2009. Several species trends could be linked to the increasing salinity of the estuary or declining dissolved oxygen levels in its middle-upper reaches. Community changes were, however, small or insignificant in the shallow and deeper waters of the upper estuary and deeper waters of the middle estuary, where environmental perturbations are often most pronounced. This may reflect the resilience of the limited suite of species that typify those reaches and thus their lack of sensitivity in reflecting longer-term change at the coarser level of mean abundance. One such species, the selected indicator, A. butcheri, did, however, show marked temporal changes at both the population and individual levels. Biomass decreased markedly in deeper waters while increasing in the shallows from earlier to later periods, presumably reflecting an onshore movement of fish, and per capita body mass in the 2+, 3+ and 4+ year classes fell steadily over time. Such changes probably indicate deteriorating habitat quality in the deeper waters. The study outcomes provide support for a multifaceted approach to the biomonitoring of estuaries using fishes and highlight the need for complementary monitoring of relevant stressors to better disentangle cause-effect pathways

Characteristics of the ichthyofauna of a temperate microtidal estuary with a reverse salinity gradient, including inter-decadal comparisons

Data on the fish fauna of the Leschenault Estuary on the lower west coast of Australia were collected and used as a model to elucidate the characteristics of permanently open estuaries with a reverse salinity gradient, which undergo seasonal changes similar to many other estuaries with Mediterranean climate. Focus was placed on determining (1) the relationships of the number of species, density, life cycle category and species composition of fishes with region (within estuary), season and year and salinity, (2) whether species are partitioned along the lengths of such systems and (3) the extent and significance of any inter-decadal changes in species composition. The analyses and interpretation involved using multi-factorial permutational multivariate analysis of variance (PERMANOVA) and analysis of similarity (ANOSIM) designs, and three new or recently published visualization tools, i.e. modified non-metric multidimensional scaling (nMDS) plots, coherent species curves and segmented bubble plots. The base, lower, upper and apex regions of the Leschenault Estuary, along which the salinity increased in each season except in winter when most rainfall occurs, were sampled seasonally for the 2 years between winter 2008 and autumn 2010. Estuarine residents contributed twice as many individuals, but less than half the number of species as marine taxa. While the numbers of marine species and estuarine residents declined between the base or lower and apex regions, the individuals of marine species dominated the catches in the base region and estuarine residents in the other three regions. Ichthyofaunal composition in each region underwent conspicuous annual cyclical changes, due to time-staggered differences in recruitment among species, and changed sequentially along the estuary, both paralleling salinity trends. Different groups of species characterized the fauna in the different regions and seasons, thereby partitioning resources among species. The ichthyofauna of the apex region, in which salinities reached 54 and temperatures 36° C, recorded the highest maximum density and, in terms of abundance, was dominated (90%) by three atherinid species, emphasizing the ability of this family to tolerate extreme conditions. Comparisons between the data for 2008-2010 and 1994 demonstrate that the spotted hardyhead Craterocephalus mugiloides and the common hardyhead Atherinomorus vaigiensis had colonized and become abundant in the Leschenault Estuary in the intervening period. This represents a southwards extension of the distribution of these essentially tropical species during a period of increasing coastal water temperatures as a result of climate change. The abundance of weed-associated species, e.g. the western gobbleguts Ostorhinchus rueppellii and the soldier Gymnapistes marmoratus, increased, whereas that of the longfinned goby Favonigobius lateralis decreased, probably reflecting increases in eutrophication and siltation, respectively

Diagnosing Autism Spectrum Disorder in community settings using the development and well-being assessment: validation in a UK population-based twin sample

Background: Increasing numbers of people are being referred for assessment for autism spectrum disorder (ASD). The NICE (UK) and the American Academy of Pediatrics recommend gathering a developmental history using a tool that operationalises ICD/DSM criteria. However the best-established diagnostic interview instruments are time-consuming, costly and rarely used outside national specialist centres. What is needed is a brief, cost-effective measure validated in community settings. We tested the Development and Well-Being Assessment (DAWBA) for diagnosing ASD in a sample of children/adolescents representative of those presenting in community mental health settings. Methods: A general population sample of twins (TEDS) was screened and 276 adolescents were selected as at low (CAST score<12; n=164) or high risk for ASD (CAST score≥15 and/or parent reported that ASD suspected/previously diagnosed; n=112). Parents completed the ASD module of the DAWBA interview by telephone or online. Families were visited at home: the ADI-R and ADOS were completed to allow a best-estimate diagnosis of ASD to be made. Results: DAWBA ASD symptom scores correlated highly with ADI-R algorithm scores (rho=.82, p<.001). Good sensitivity (0.88) and specificity (0.85) were achieved using DAWBA computerised algorithms. Clinician review of responses to DAWBA questions minimally changed sensitivity (0.86) and specificity (0.87). Positive (0.82-0.95) and negative (0.90) predictive values were high. Eighty-six percent of children were correctly classified. Performance was improved by using it in conjunction with the ADOS. Conclusions: The DAWBA is a brief structured interview that showed good sensitivity and specificity in this general population sample. It requires little training, is easy to administer (online or by interview), and diagnosis is aided by an algorithm. It holds promise as a tool for assisting with assessment in community settings and may help services implement the recommendations made by NICE and the American Academy of Pediatrics regarding diagnosis of young people on the autism spectru

An Evaluation Framework for Controlled Natural Languages

Abstract. This paper presents a general framework called ontographs that relies on a graphical notation and enables the tool-independent and reliable evaluation of human understandability of knowledge represen-tation languages. An experiment with 64 participants is presented that applies this framework and compares a controlled natural language to a common formal language. The results show that the controlled natural language is easier to understand, needs less learning time, and is more accepted by its users.

A new ghost cell/level set method for moving boundary problems:application to tumor growth

In this paper, we present a ghost cell/level set method for the evolution of interfaces whose normal velocity depend upon the solutions of linear and nonlinear quasi-steady reaction-diffusion equations with curvature-dependent boundary conditions. Our technique includes a ghost cell method that accurately discretizes normal derivative jump boundary conditions without smearing jumps in the tangential derivative; a new iterative method for solving linear and nonlinear quasi-steady reaction-diffusion equations; an adaptive discretization to compute the curvature and normal vectors; and a new discrete approximation to the Heaviside function. We present numerical examples that demonstrate better than 1.5-order convergence for problems where traditional ghost cell methods either fail to converge or attain at best sub-linear accuracy. We apply our techniques to a model of tumor growth in complex, heterogeneous tissues that consists of a nonlinear nutrient equation and a pressure equation with geometry-dependent jump boundary conditions. We simulate the growth of glioblastoma (an aggressive brain tumor) into a large, 1 cm square of brain tissue that includes heterogeneous nutrient delivery and varied biomechanical characteristics (white matter, gray matter, cerebrospinal fluid, and bone), and we observe growth morphologies that are highly dependent upon the variations of the tissue characteristics—an effect observed in real tumor growth

Computational Implementation of a Thermodynamically Based Work Potential Model For Progressive Microdamage and Transverse Cracking in Fiber-Reinforced Laminates

A continuum-level, dual internal state variable, thermodynamically based, work potential model, Schapery Theory, is used capture the effects of two matrix damage mechanisms in a fiber-reinforced laminated composite: microdamage and transverse cracking. Matrix microdamage accrues primarily in the form of shear microcracks between the fibers of the composite. Whereas, larger transverse matrix cracks typically span the thickness of a lamina and run parallel to the fibers. Schapery Theory uses the energy potential required to advance structural changes, associated with the damage mechanisms, to govern damage growth through a set of internal state variables. These state variables are used to quantify the stiffness degradation resulting from damage growth. The transverse and shear stiffness of the lamina are related to the internal state variables through a set of measurable damage functions. Additionally, the damage variables for a given strain state can be calculated from a set of evolution equations. These evolution equations and damage functions are implemented into the finite element method and used to govern the constitutive response of the material points in the model. Additionally, an axial failure criterion is included in the model. The response of a center-notched, buffer strip-stiffened panel subjected to uniaxial tension is investigated and results are compared to experiment

Track E Implementation Science, Health Systems and Economics

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/138412/1/jia218443.pd

Assessment of the condition of the Swan-Canning Estuary in 2012, based on the Fish Community Indices of estuarine condition

The Swan River Trust has been working closely with other government agencies, local government authorities, community groups and research institutions to reduce nutrient and organic loading to the Swan-Canning river system. This is a priority issue for the waterway that has impacts on water quality, ecological health and community benefit. Until recently the Trust’s environmental monitoring program has been focused on water quality reporting in the estuary and catchment and it has long been envisaged that reporting on ecological health will be a key component of Riverpark reporting in the future. Reporting on changes in fish communities provides insight into the biotic integrity of the system and offers one measure to complement the existing water quality program Through a collaborative project between the Trust, Murdoch University, Department of Fisheries and Department of Water, Fish Community Indices have been developed for assessing the ecological condition of the Swan-Canning Estuary (Hallett et al. 2012, Hallett and Valesini 2012). These indices were developed for the shallow, nearshore waters of the estuary and also for its deeper, offshore waters, as the composition of the fish communities living in these different environments tends to differ