Integrative missing value estimation for microarray data

BACKGROUND: Missing value estimation is an important preprocessing step in microarray analysis. Although several methods have been developed to solve this problem, their performance is unsatisfactory for datasets with high rates of missing data, high measurement noise, or limited numbers of samples. In fact, more than 80% of the time-series datasets in Stanford Microarray Database contain less than eight samples. RESULTS: We present the integrative Missing Value Estimation method (iMISS) by incorporating information from multiple reference microarray datasets to improve missing value estimation. For each gene with missing data, we derive a consistent neighbor-gene list by taking reference data sets into consideration. To determine whether the given reference data sets are sufficiently informative for integration, we use a submatrix imputation approach. Our experiments showed that iMISS can significantly and consistently improve the accuracy of the state-of-the-art Local Least Square (LLS) imputation algorithm by up to 15% improvement in our benchmark tests. CONCLUSION: We demonstrated that the order-statistics-based integrative imputation algorithms can achieve significant improvements over the state-of-the-art missing value estimation approaches such as LLS and is especially good for imputing microarray datasets with a limited number of samples, high rates of missing data, or very noisy measurements. With the rapid accumulation of microarray datasets, the performance of our approach can be further improved by incorporating larger and more appropriate reference datasets

Electroelastic Effect of Thickness Mode Langasite Resonators

Langasite is a very promising material for resonators due to its good temperature behavior and high piezoelectric coupling, low acoustic loss, and high Q factor. The biasing effect for langasite resonators is crucial for resonator design. In this article, the resonant frequency shift of a thickness-mode langasite resonator is analyzed with respect to a direct current (DC) electric field applied in the thickness direction. The vibration modes of a thin langasite plate fully coated with an electrode are analyzed. The analysis is based on the theory for small fields superposed on a bias in electroelastic bodies and the first-order perturbation integral theory. The electroelastic effect of the resonator is analyzed by both analytical and finite-element methods. The complete set of nonlinear elastic, piezoelectric, dielectric permeability, and electrostrictive constants of langasite is used in the theoretical and numerical analysis. The sensitivity of electroelastic effect to nonlinear material constants is analyzed