Genome sequencing and molecular networking analysis of the wild fungusAnthostomella pineareveal its ability to produce a diverse range of secondary metabolites

Background Filamentous fungi are prolific producers of bioactive molecules and enzymes with important applications in industry. Yet, the vast majority of fungal species remain undiscovered or uncharacterized. Here we focus our attention to a wild fungal isolate that we identified as Anthostomella pinea. The fungus belongs to a complex polyphyletic genus in the family of Xylariaceae, which is known to comprise endophytic and pathogenic fungi that produce a plethora of interesting secondary metabolites. Despite that, Anthostomella is largely understudied and only two species have been fully sequenced and characterized at a genomic level.Results In this work, we used long-read sequencing to obtain the complete 53.7 Mb genome sequence including the full mitochondrial DNA. We performed extensive structural and functional annotation of coding sequences, including genes encoding enzymes with potential applications in biotechnology. Among others, we found that the genome of A. pinea encodes 91 biosynthetic gene clusters, more than 600 CAZymes, and 164 P450s. Furthermore, untargeted metabolomics and molecular networking analysis of the cultivation extracts revealed a rich secondary metabolism, and in particular an abundance of sesquiterpenoids and sesquiterpene lactones. We also identified the polyketide antibiotic xanthoepocin, to which we attribute the anti–Gram-positive effect of the extracts that we observed in antibacterial plate assays.Conclusions Taken together, our results provide a first glimpse into the potential of Anthstomella pinea to provide new bioactive molecules and biocatalysts and will facilitate future research into these valuable metabolites

High-field muSR studies of superconducting and magnetic correlations in cuprates above Tc

The advent of high transverse-field muon spin rotation (TF-muSR) has led to recent muSR investigations of the magnetic-field response of cuprates above the superconducting transition temperature T_c. Here the results of such experiments on hole-doped cuprates are reviewed. Although these investigations are currently ongoing, it is clear that the effects of high field on the internal magnetic field distribution of these materials is dependent upon a competition between superconductivity and magnetism. In La_{2-x}Sr_xCuO_4 the response to the external field above Tc is dominated by heterogeneous spin magnetism. However, the magnetism that dominates the observed inhomogeneous line broadening below x ~ 0.19 is overwhelmed by the emergence of a completely different kind of magnetism in the heavily overdoped regime. The origin of the magnetism above x ~ 0.19 is currently unknown, but its presence hints at a competition between superconductivity and magnetism that is reminiscent of the underdoped regime. In contrast, the width of the internal field distribution of underdoped YBa_2Cu_3O_y above Tc is observed to track Tc and the density of superconducting carriers. This observation suggests that the magnetic response above Tc is not dominated by electronic moments, but rather inhomogeneous fluctuating superconductivity.Comment: 28 pages, 11 figures, 104 reference

A study of the superconducting gap in RNi2_2B2_2C (R = Y, Lu) single crystals by inelastic light scattering

Superconductivity-induced changes in the electronic Raman scattering response were observed for the RNi$_2$B$_2$C (R = Y, Lu) system in different scattering geometries. In the superconducting state, 2$\Delta$-like peaks were observed in A$_{1g}$, B$_{1g}$, and B$_{2g}$ spectra from single crystals. The peaks in A$_{1g}$ and B$_{2g}$ symmetries are significantly sharper and stronger than the peak in B$_{1g}$ symmetry. The temperature dependence of the frequencies of the 2$\Delta$-like peaks shows typical BCS-type behavior, but the apparent values of the $2\Delta$ gap are strongly anisotropic for both systems. In addition, for both YNi$_2$B$_2$C and LuNi$_2$B$_2$C systems, there exists reproducible scattering strength below the $2\Delta$ gap which is roughly linear to the frequency in B$_{1g}$ and B$_{2g}$ symmetries. This discovery of scattering below the gap in non-magnetic borocarbide superconductors, which are thought to be conventional BCS-type superconductors, is a challenge for current understanding of superconductivity in this system.Comment: Added text, changed a figure, and added references. Will appear in Phys. Rev.

Nernst effect of iron pnictide and cuprate superconductors: signatures of spin density wave and stripe order

The Nernst effect has recently proven a sensitive probe for detecting unusual normal state properties of unconventional superconductors. In particular, it may sensitively detect Fermi surface reconstructions which are connected to a charge or spin density wave (SDW) ordered state, and even fluctuating forms of such a state. Here we summarize recent results for the Nernst effect of the iron pnictide superconductor $\rm LaO_{1-x}F_xFeAs$, whose ground state evolves upon doping from an itinerant SDW to a superconducting state, and the cuprate superconductor $\rm La_{1.8-x}Eu_{0.2}Sr_xCuO_4$ which exhibits static stripe order as a ground state competing with the superconductivity. In $\rm LaO_{1-x}F_xFeAs$, the SDW order leads to a huge Nernst response, which allows to detect even fluctuating SDW precursors at superconducting doping levels where long range SDW order is suppressed. This is in contrast to the impact of stripe order on the normal state Nernst effect in $\rm La_{1.8-x}Eu_{0.2}Sr_xCuO_4$. Here, though signatures of the stripe order are detectable in the temperature dependence of the Nernst coefficient, its overall temperature dependence is very similar to that of $\rm La_{2-x}Sr_xCuO_4$, where stripe order is absent. The anomalies which are induced by the stripe order are very subtle and the enhancement of the Nernst response due to static stripe order in $\rm La_{1.8-x}Eu_{0.2}Sr_xCuO_4$ as compared to that of the pseudogap phase in $\rm La_{2-x}Sr_xCuO_4$, if any, is very small.Comment: To appear in: 'Properties and applications of thermoelectric materials - II', V. Zlatic and A. Hewson, editors, Proceedings of NATO Advanced Research Workshop, Hvar, Croatia, September 19 -25, 2011, NATO Science for Peace and Security Series B: Physics and Biophysics, (Springer Science+Business Media B.V. 2012

Two-dimensional imaging of the spin-orbit effective magnetic field

We report on spatially resolved measurements of the spin-orbit effective magnetic field in a GaAs/InGaAs quantum-well. Biased gate electrodes lead to an electric-field distribution in which the quantum-well electrons move according to the local orientation and magnitude of the electric field. This motion induces Rashba and Dresselhaus effective magnetic fields. The projection of the sum of these fields onto an external magnetic field is monitored locally by measuring the electron spin-precession frequency using time-resolved Faraday rotation. A comparison with simulations shows good agreement with the experimental data.Comment: 6 pages, 4 figure

Inelastic Light Scattering From Correlated Electrons

Inelastic light scattering is an intensively used tool in the study of electronic properties of solids. Triggered by the discovery of high temperature superconductivity in the cuprates and by new developments in instrumentation, light scattering both in the visible (Raman effect) and the X-ray part of the electromagnetic spectrum has become a method complementary to optical (infrared) spectroscopy while providing additional and relevant information. The main purpose of the review is to position Raman scattering with regard to single-particle methods like angle-resolved photoemission spectroscopy (ARPES), and other transport and thermodynamic measurements in correlated materials. Particular focus will be placed on photon polarizations and the role of symmetry to elucidate the dynamics of electrons in different regions of the Brillouin zone. This advantage over conventional transport (usually measuring averaged properties) indeed provides new insights into anisotropic and complex many-body behavior of electrons in various systems. We review recent developments in the theory of electronic Raman scattering in correlated systems and experimental results in paradigmatic materials such as the A15 superconductors, magnetic and paramagnetic insulators, compounds with competing orders, as well as the cuprates with high superconducting transition temperatures. We present an overview of the manifestations of complexity in the Raman response due to the impact of correlations and developing competing orders. In a variety of materials we discuss which observations may be understood and summarize important open questions that pave the way to a detailed understanding of correlated electron systems.Comment: 62 pages, 48 figures, to appear in Rev. Mod. Phys. High-resolution pdf file available at http://onceler.uwaterloo.ca/~tpd/RMP.pd

Nernst Effect of stripe ordering La1.8−x_{1.8-x}Eu0.2_{0.2}Srx_xCuO4_4

We investigate the transport properties of La$_{1.8-x}$Eu$_{0.2}$Sr$_x$CuO$_4$ ($x=0.04$, 0.08, 0.125, 0.15, 0.2) with a special focus on the Nernst effect in the normal state. Various anomalous features are present in the data. For $x=0.125$ and 0.15 a kink-like anomaly is present in the vicinity of the onset of charge stripe order in the LTT phase, suggestive of enhanced positive quasiparticle Nernst response in the stripe ordered phase. At higher temperature, all doping levels except $x=0.2$ exhibit a further kink anomaly in the LTO phase which cannot unambiguously be related to stripe order. Moreover, a direct comparison between the Nernst coefficients of stripe ordering La$_{1.8-x}$Eu$_{0.2}$Sr$_x$CuO$_4$ and superconducting La$_{2-x}$Sr$_x$CuO$_4$ at the doping levels $x=0.125$ and $x=0.15$ reveals only weak differences. Our findings make high demands on any scenario interpreting the Nernst response in hole-doped cuprates

PathOrganic – Risks and Recommendations Regarding Human Pathogens in Organic Vegetable Production Chains

PathOrganic assesses risks associated with the consumption of fresh and minimally processed vegetables due to the prevalence of bacterial human pathogens in plant produce. The project evaluates whether organic production poses a risk on food safety, taking into consideration sources of pathogen transmission (e.g. animal manure). The project also explores whether organic versus conventional production practices may reduce the risk of pathogen manifestation. In Europe, vegetable-linked outbreaks are not well investigated. A conceptual model together with novel sampling strategies and specifically adjusted methods provides the basis for large-scale surveys of organically grown plant produce in five European countries. Critical control points are determined and evaluated and factors contributing to a food safety problem are analyzed in greenhouse and field experiments. The project aims at developing a quantitative risk assessment model and at formulating recommendations for improving food safety in organic vegetable production

Evidence for Magnetic Pseudoscaling in Overdoped La(2-x)Sr(x)CuO(4)

We report the results of electronic Raman scattering experiments on an overdoped La(1.78)Sr(0.22)CuO(4) single crystal as a function of temperature. The scattering rate Gamma(w->0,T) has been determined from the normal state B(1g) spectra in the range 50 K < T < 300 K. Gamma(T) decreases linearly from 300 K to about 175 K and then undergoes a reduction with respect to the expected mean-field behavior. This trend suggests a crossover to pseudoscaling regime at about T(cr)=160 K. The results are in good agreement with the prediction of the nearly antiferromagnetic Fermi liquid model. There is no evidence of a pseudogap in the spectra obtained from this overdoped sample.Comment: RevTex, 4 pages with 3 PS figures included, replaced with minor changes in the text and reference