Specific discrimination of three pathogenic salmonella enterica subsp enterica serotypes using CarB-based oligonuceotide microarray

It is important to rapidly and selectively detect and analyze pathogenic Salmonella enterica subsp. enterica in contaminated food to reduce the morbidity and mortality of Salmonella infection and to guarantee food safety. In the present work, we developed an oligonucleotide microarray containing duplicate specific capture probes based on the carB gene, which encodes the carbamoyl phosphate synthetase large subunit, as a competent biomarker evaluated by genetic analysis to selectively and efficiently detect and discriminate three S. enterica subsp. enterica serotypes: Choleraesuis, Enteritidis, and Typhimurium. Using the developed microarray system, three serotype targets were successfully analyzed in a range as low as 1.6 to 3.1 nM and were specifically discriminated from each other without nonspecific signals. In addition, the constructed microarray did not have cross-reactivity with other common pathogenic bacteria and even enabled the clear discrimination of the target Salmonella serotype from a bacterial mixture. Therefore, these results demonstrated that our novel carB-based oligonucleotide microarray can be used as an effective and specific detection system for S. enterica subsp. enterica serotypes.open117Nsciescopu

GLOBAL SOLUTIONS OF NONLINEAR TRANSPORT EQUATIONS FOR CHEMOSENSITIVE MOVEMENT

A widespread phenomenon in moving microorganisms and cells is their ability to reorient themselves depending on changes of concentrations of certain chemical signals. In this paper we discuss kinetic models for chemosensitive movement, which also takes into account evaluations of gradient fields of chemical stimuli which subsequently influence the motion of the respective microbiological species. The basic type of model was discussed by Alt [J. Math. Biol., 9 (1980), pp. 147-177], [J. Reine Angew. Math., 322 (1981), pp. 15-41] and by Othmer, Dunbar, and Alt [J. Math. Biol., 26 (1988), pp. 263-298]. Chalub et al. rigorously proved that, in three dimensions, these kinds of kinetic models lead to the classical Keller-Segel model as its drift-diffusion limit when the equation for the chemo-attractant is of elliptic type [Monatsh. Math., 142 (2004), pp. 123-141], [On the Derivation of Drift-Diffusion Model for Chemotaxis from Kinetic Equations, ANUM preprint 14/02, Vienna Technical University, 2002]. In [H. Hwang, K. Kang, and A. Stevens, Drift-diffusion limits of kinetic models for chemotaxis: A generalization, Discrete Contin. Dyn. Syst. Ser. B., to appear] it was proved that the macroscopic diffusion limit exists in both two and three dimensions also when the equation of the chemo-attractant is of parabolic type. So far in the rigorous derivations, only the density of the chemo-attractant was supposed to influence the motion of the chemosensitive species. Here we show that in the macroscopic limit some types of evaluations of gradient fields of the chemical stimulus result in a change of the classical parabolic Keller-Segel model for chemotaxis. Under suitable structure conditions, global solutions for the kinetic models can be shown.open1128Nsciescopu

Streak instability in turbulent channel flow: the seeding mechanism of large-scale motions

It has often been proposed that the formation of large-scale motion (or bulges) is a consequence of successive mergers and/or growth of near-wall hairpin vortices. In the present study, we report our direct observation that large-scale motion is generated by an instability of an ‘amplified’ streaky motion in the outer region (i.e. very-large-scale motion). We design a numerical experiment in turbulent channel flow up to Reτ '2000 where a streamwise-uniform streaky motion is artificially driven by body forcing in the outer region computed from the previous linear theory (Hwang & Cossu, J. Fluid Mech., vol. 664, 2015, pp. 51–73). As the forcing amplitude is increased, it is found that an energetic streamwise vortical structure emerges at a streamwise wavelength of λx/h '1–5 (h is the half-height of the channel). The application of dynamic mode decomposition and the examination of turbulence statistics reveal that this structure is a consequence of the sinuous-mode instability of the streak, a subprocess of the self-sustaining mechanism of the large-scale outer structures. It is also found that the statistical features of the vortical structure are remarkably similar to those of the largescale motion in the outer region. Finally, it is proposed that the largest streamwise length of the streak instability determines the streamwise length scale of very-largescale motion

Multiplex 16S rRNA-derived geno-biochip for detection of 16 bacterial pathogens from contaminated foods

Foodborne diseases caused by various pathogenic bacteria occur worldwide. To prevent foodborne diseases and minimize their impacts, it is important to inspect contaminated foods and specifically detect many types of pathogenic bacteria. Several DNA oligonucleotide biochips based on 16S rRNA have been investigated to detect bacteria; however, a mode of detection that can be used to detect diverse pathogenic strains and to examine the safety of food matrixes is still needed. In the present work, a 16S rRNA gene-derived geno-biochip detection system was developed after screening DNA oligonucleotide specific capture probes, and it was validated for multiple detection of 16 pathogenic strains that frequently occur with a signature pattern. rRNAs were also used as detection targets directly obtained from cell lysates without any purification and amplification steps in the bacterial cells separated from eight food matrixes by simple pretreatments. Thus, the developed 16S rRNA-derived geno-biochip can be successfully used for the rapid and multiple detection of the 16 pathogenic bacteria frequently isolated from contaminated foods that are important for food safety.1111Ysciescopu

Epitope Mapping of Antibodies Suggests the Novel Membrane Topology of B-Cell Receptor Associated Protein 31 on the Cell Surface of Embryonic Stem Cells: The Novel Membrane Topology of BAP31

When located in the endoplasmic reticulum (ER) membrane, B-cell receptor associated protein 31 (BAP31) is involved in the export of secreted proteins from the ER to the plasma membrane. In a previous study, we generated two monoclonal antibodies (mAbs), 297-D4 and 144-A8, that bound to surface molecules on human embryonic stem cells (hESCs), but not to surface molecules on mouse embryonic stem cells (mESCs). Subsequent studies revealed that the mAbs recognized BAP31 on the surface of hESCs. To investigate the membrane topology of BAP31 on the cell surface, we first examined the epitope specificity of 297-D4 and 144-A8, as well as a polyclonal anti-BAP31 antibody (alpha-BAP31). We generated a series of GST-fused BAP31 mutant proteins in which BAP31 was serially deleted at the C-terminus. GST-fused BAP31 mutant proteins were then screened to identify the epitopes targeted by the antibodies. Both 297-D4 and 144-A8 recognized C-terminal residues 208-217, while alpha-BAP31 recognized C-terminal residues 165-246, of BAP31 on hESCs, suggesting that the C-terminal domain of BAP31 is exposed on the cell surface. The polyclonal antibody alpha-BAP31 bound to mESCs, which confirmed that the C-terminal domain of BAP31 is also exposed on the surface of these cells. Our results show for the first time the novel membrane topology of cell surface-expressed BAP31 as the extracellular exposure of the BAP31 C-terminal domain was not predicted from previous studies.published_or_final_versio

Nonlinear oscillations of a sessile drop on a hydrophobic surface induced by ac electrowetting

We examine the nature of ac electrowetting (EW)-driven axisymmetric oscillations of a sessile water drop on a dielectric substrate. In ac EW, small-amplitude oscillations of a drop differ from the Rayleigh linear modes of freely oscillating drops. In this paper, we demonstrate that changes in the time-averaged contact angle of the sessile drop attributed to the presence of an electric field and a solid substrate mainly caused this discrepancy. We combine the domain perturbation method with the Lindsted-Poincare method to derive an asymptotic formula for resonant frequency. Theoretical analysis shows that the resonant frequency is a function of the time-averaged contact angle. Each mode of the resonance frequency is a linear function of epsilon(1), which is the magnitude of the cosine of the time-averaged contact angle. The most dominant mode in this study, that is, the fundamental mode n = 2, decreases linearly with epsilon(1). The results of the theoretical model are compared with those of both the experiments and numerical simulations. The average resonant frequency deviation between the perturbation solutions and numerical simulations is 4.3%, whereas that between the perturbation solutions and the experiments is 1.8%.ope

A rapid, efficient, and facile solution for dental hypersensitivity: The tannin–iron complex

Dental hypersensitivity due to exposure of dentinal tubules under the enamel layer to saliva is a very popular and highly elusive technology priority in dentistry. Blocking water flow within exposed dentinal tubules is a key principle for curing dental hypersensitivity. Some salts used in "at home" solutions remineralize the tubules inside by concentrating saliva ingredients. An "in-office" option of applying dense resin sealants on the tubule entrance has only localized effects on well-defined sore spots. We report a self-assembled film that was formed by facile, rapid (4 min), and efficient (approximately 0.5 g/L concentration) dip-coating of teeth in an aqueous solution containing a tannic acid-iron(III) complex. It quickly and effectively occluded the dentinal tubules of human teeth. It withstood intense tooth brushing and induced hydroxyapatite remineralisation within the dentinal tubules. This strategy holds great promise for future applications as an effective and user-friendly desensitizer for managing dental hypersensitivity.111310Ysciescopu

Molecular Characterization of Two Monoclonal Antibodies against the Same Epitope on B-Cell Receptor Associated Protein 31

published_or_final_versio

RGO/Nylon-6 composite mat with unique structural features and electrical properties obtained from electrospinning and hydrothermal process

In this work, the reduced graphene oxide (RGO) sheets were effectively uploaded through nylon-6 fibers using combined process of electrospinning and hydrothermal treatment. Good dispersion of graphene oxide (GO) with nylon-6 solution could allow to upload GO sheets through nylon-6 fibers and facilitate the formation of spider-wave-like nano-nets during electrospinning. GO sheets present on/into nylon-6 spider-wave-like nano-nets were further reduced to RGO using hydrothermal treatment. The impregnated GO sheets into nylon-6 nanofibers and their reduction during hydrothermal treatment were confirmed by FE-SEM, TEM, FT-IR and Raman spectra. The electrical characteristics of pristine nylon-6, GO/nylon-6 and RGO/nylon-6 nanofibers were investigated and it was found that RGO/nylon-6 composite mat had better electrical conductivity than others. The formation of spider-wave-like nano-nets as well as indirect route of incorporation of RGO sheets on electrospun nylon-6 mat may open a new direction for future graphene/polymer electronics. © 2013 The Korean Fiber Society and Springer Science+Business Media Dordrecht

Mesenchymal stem cell-based therapy for ischemic stroke

Ischemic stroke represents a major, worldwide health burden with increasing incidence. Patients affected by ischemic strokes currently have few clinically approved treatment options available. Most currently approved treatments for ischemic stroke have narrow therapeutic windows, severely limiting the number of patients able to be treated. Mesenchymal stem cells represent a promising novel treatment for ischemic stroke. Numerous studies have demonstrated that mesenchymal stem cells functionally improve outcomes in rodent models of ischemic stroke. Recent studies have also shown that exosomes secreted by mesenchymal stem cells mediate much of this effect. In the present review, we summarize the current literature on the use of mesenchymal stem cells to treat ischemic stroke. Further studies investigating the mechanisms underlying mesenchymal stem cells tissue healing effects are warranted and would be of benefit to the field