Nongauge bright soliton of the nonlinear Schrodinger (NLS) equation and a family of generalized NLS equations

We present an approach to the bright soliton solution of the NLS equation from the standpoint of introducing a constant potential term in the equation. We discuss a `nongauge' bright soliton for which both the envelope and the phase depend only on the traveling variable. We also construct a family of generalized NLS equations with solitonic sech^p solutions in the traveling variable and find an exact equivalence with other nonlinear equations, such as the Korteveg-de Vries and Benjamin-Bona-Mahony equations when p=2Comment: ~4 pages, 3 figures, 16 references, published versio

Parallel ion strings in linear multipole traps

Additional radio-frequency (rf) potentials applied to linear multipole traps create extra field nodes in the radial plane which allow one to confine single ions, or strings of ions, in totally rf field-free regions. The number of nodes depends on the order of the applied multipole potentials and their relative distance can be easily tuned by the amplitude variation of the applied voltages. Simulations using molecular dynamics show that strings of ions can be laser cooled down to the Doppler limit in all directions of space. Once cooled, organized systems can be moved with very limited heating, even if the cooling process is turned off

Communications Biophysics

Contains reports on two research projects.United States Air Force (Contract AF19(604)-4112

An Inversion Disrupting FAM134B Is Associated with Sensory Neuropathy in the Border Collie Dog Breed

Sensory neuropathy in the Border Collie is a severe neurological disorder caused by the degeneration of sensory and, to a lesser extent, motor nerve cells with clinical signs starting between 2 and 7 months of age. Using a genome-wide association study approach with three cases and 170 breed matched controls, a suggestive locus for sensory neuropathy was identified that was followed up using a genome sequencing approach. An inversion disrupting the candidate gene FAM134B was identified. Genotyping of additional cases and controls and RNAseq analysis provided strong evidence that the inversion is causal. Evidence of cryptic splicing resulting in novel exon transcription for FAM134B was identified by RNAseq experiments. This investigation demonstrates the identification of a novel sensory neuropathy associated mutation, by mapping using a minimal set of cases and subsequent genome sequencing. Through mutation screening, it should be possible to reduce the frequency of or completely eliminate this debilitating condition from the Border Collie breed population

Studies of CMB structure at Dec=40. II: Analysis and cosmological interpretation

We present a detailed analysis of the cosmic microwave background structure in the Tenerife Dec=+40 degrees data. The effect of local atmospheric contributions on the derived fluctuation amplitude is considered, resulting in an improved separation of the intrinsic CMB signal from noise. Our analysis demonstrates the existence of common structure in independent data scans at 15 and 33 GHz. For the case of fluctuations described by a Gaussian auto-correlation function, a likelihood analysis of our combined results at 15 and 33 GHz implies an intrinsic rms fluctuation level of 48^{+21}_{-15} uK on a coherence scale of 4 degrees; the equivalent analysis for a Harrison-Zel'dovitch model gives a power spectrum normalisation of Q_{rms-ps} = 22^{+10}_{-6} uK. The fluctuation amplitude is seen to be consistent at the 68% confidence level with that reported for the COBE two-year data for primordial fluctuations described by a power law model with a spectral index in the range 1.0 \le n \le 1.6. This limit favours the large scale CMB anisotropy being dominated by scalar fluctuations rather than tensor modes from a gravitational wave background. The large scale Tenerife and COBE results are considered in conjunction with observational results from medium scale experiments in order to place improved limits on the fluctuation spectral index; we find n=1.10 +/- 0.10 assuming standard CDM with H_{0}=50 kms^{-1}Mpc^{-1}.Comment: 10 pages LaTeX, including 8 PostScript figures. Accepted for publication in MNRA