Effect of cultivation on the activity of some soil enzymes

Non-Peer Reviewe

Mitigation of carbon using Atriplex nummularia revegetation

The use of abandoned or marginally productive land to mitigate greenhouse gas emissions may avoid competition with food and water production. Atriplex nummularia Lindl. is a perennial shrub commonly established for livestock forage on saline land, however, its potential for carbon mitigation has not been systematically evaluated. Similarly, although revegetation is an allowable activity to mitigate carbon within Article 3.4 of the United Nations Framework Convention on Climate Change's Kyoto Protocol, there is a paucity of information on rates of carbon mitigation in soils and biomass through this mechanism. For six sites where A. nummularia had been established across southern Australia four were used to assess changes in soil carbon storage and four were used to develop biomass carbon sequestration estimates. A generalised allometric equation for above and below ground biomass was developed, with a simple crown volume index explaining 81% of the variation in total biomass. There were no significant differences in soil organic carbon storage to 0.3 m or 2 m depth compared to existing agricultural land-use. Between 2.2 and 8.3 Mg C ha−1 or 0.2–0.6 Mg C ha−1 yr−1 was sequestered in above and below ground biomass and this translates to potential total sequestration of 1.1–3.6 Tg C yr−1 on saline land across Australia. Carbon income and forage grazing may thus provide a means to finance the stabilization of compromised land

Abundance and diversity of sulphur-oxidising bacteria and their role in oxidising elemental sulphur in cropping soils

There is an increasing interest in elemental S as a S fertiliser source, but to be available to plants, elemental S has to be oxidised to sulphate. Elemental S oxidation is known to be affected by soil properties and environmental conditions, but it is still unclear if elemental S oxidation is related to the abundance and diversity of S-oxidising bacteria in cropping soils. In this study, we investigated the abundance and diversity of S-oxidising bacteria by targeting a functional gene (soxB) and assessed their relationship with elemental S oxidation in ten cropping soils. Positive correlations between soil C, N and S contents on the one hand and the abundances of soxB and 16S ribosomal deoxyribonucleic acid (rRNA) genes on the other suggested that the abundances of S oxidising bacteria in particular and of bacteria in general depend on soil C and nutrient supply. Both soxB and 16S rRNA gene abundances were significantly correlated with the oxidation rate of elemental S (P < 0.05). In addition, more than 80% of the variation in the oxidation rate of elemental S could be explained by the combination of soxB or 16S rRNA gene abundances and soil pH, suggesting that pH not only affected bacterial abundances but also their activity during elemental S oxidation. Clone libraries constructed with the soxB primers showed genera belonging to Alphaproteobacteria, Betaproteobacteria and Deltaproteobacteria and Actinobacteria. The phylogenetic diversity and relative distribution of soxB clones revealed great differences across soils. However, no direct linkage was found between the diversity of S-oxidising bacteria and elemental S oxidation rate.Cuicui Zhao, Vadakattu V. S. R. Gupta, Fien Degryse and& Mike J. McLaughli

The response of fine root endophyte (Glomus tenue) to waterlogging is dependent on host plant species and soil type

Background and Aims: An increase in a form of arbuscular mycorrhizal (AM) fungi, termed fine endophyte or fine root endophyte (Glomus tenue (Greenall) I.R. Hall), is often observed under extreme environmental conditions. We investigated the influence of host plant species, waterlogging and landscape zone (soil type) on colonisation by fine root endophyte. Methods: Colonisation by AM fungi and fine root endophyte was measured in Lolium rigidum Gaudin (ryegrass) and Lotus subbiflorus Lag. (lotus) sampled from the upper, middle and lower/riparian zones of a sloping pasture. Ryegrass and lotus were then grown in a glasshouse in soil from these three zones: waterlogging was initiated for half the pots from day 43 and colonisation determined 35 days later. Results: In the field, AM fungal colonisation was lowest in the lower zone for ryegrass only. In the glasshouse, waterlogging greatly decreased AM fungal colonisation, with the exception of lotus in lower zone soil where colonisation by fine root endophyte was prolific. Waterlogging impacts on plant growth were small. Conclusions: Fine root endophyte better withstands the stressful conditions induced by waterlogging than other forms of AM fungi, but this response differs with host plant. Further study of the environmental niche of fine root endophyte is necessary to understand its function under extreme conditions

Composts addition may improve biology in cotton soils

Composts can provide a source of organic carbon and nutrients for soil biota and increase soil fertility as well as provide other biological and structural benefits hence compost addition to cotton soils is seen as a way to improve cotton soil biological health and fertility. In a six month incubation experiment we analysed the changes in microbial populations and activities related to C and N cycling following the application of feedlot, poultry manure and gin trash compost materials. A significant variation in the chemical composition, e.g. major nutrients and trace elements, was found between the three compost products. The feedlot compost generally contained higher levels of dissolved organic carbon, total nitrogen and bicarbonate extractable phosphorus whereas the Gin trash compost had lower carbon and nutrient concentrations. The effect of compost addition @ 5 and 10t/ha generally increased microbial activity but the effect was only evident during the first two weeks of incubation. Composts effects on the abundance of total bacteria (16S), nitrifying (amoA), nitrogen fixing (nifH) and denitrifying bacteria (nosZ) and total fungi (ITS gene) varied between different composts. The addition of feedlot and poultry compost material significantly increased the levels of dissolved organic carbon (DOC) and nitrogen (DON) in soil compared to that in control soils while ‘Gin trash’ compost had no effect. These differences reflected in the microbial catabolic diversity changes in the compost amended soils. Therefore, chemical analysis of the compost material before application is recommended to more fully consider its’ potential benefits

Management of soilborne Rhizoctonia disease risk in cropping systems

Rhizoctonia continues to be an important (average annual cost $59 million with potential costs$165 million, Brennan and Murray, 2009) but complex disease in the southern agricultural region, especially lower rainfall region. The fungus Rhizoctonia solani AG8 is present in Australian soils as part of the microbial community. This pathogenic fungus is a good saprophyte (grows on crop residues and soil organic matter), adapted to dry conditions and lower fertility soils. The aim of this research was to improve our understanding of the interactions between pathogen inoculum levels and natural soil biological activity for long term control of Rhizoctonia and to improve the prediction and management of the disease. A series of multi-year field trials were conducted at sites in SA, Victoria and NSW to determine key soil, environment and management factors influencing the pathogen dynamics and disease impact in cereal crops. These trials were complemented with annual field experiments to investigate the effect of specific management practices including fungicide evaluation

Nitrogen cycling in summer active perennial grass systems in South Australia: Non-symbiotic nitrogen fixation

Non-symbiotic nitrogen (N2) fixation by diazotrophic bacteria is a potential source for biological N inputs in non-leguminous crops and pastures. Perennial grasses generally add larger quantities of above- and belowground plant residues to soil, and so can support higher levels of soil biological activity than annual crops. In this study, the hypothesis is tested that summer-active perennial grasses can provide suitable microsites with the required carbon supply for N2 fixation by diazotrophs, in particular during summer, through their rhizosphere contribution. In a field experiment on a Calcarosol at Karoonda, South Australia, during summer 2011, we measured populations of N2-fixing bacteria by nifH-PCR quantification and the amount of 15N2 fixed in the rhizosphere and roots of summer-active perennial grasses. Diazotrophic N2 fixation estimates for the grass roots ranged between 0.92 and 2.35 mg 15N kg–1 root day–1. Potential rates of N2 fixation for the rhizosphere soils were 0.84–1.4 mg 15N kg–1 soil day–1 whereas the amount of N2 fixation in the bulk soil was 0.1–0.58 mg 15N kg–1 soil day–1. Populations of diazotrophic bacteria in the grass rhizosphere soils (2.45 × 106 nifH gene copies g–1 soil) were similar to populations in the roots (2.20 × 106 nifH gene copies g–1 roots) but the diversity of diazotrophic bacteria was significantly higher in the rhizosphere than the roots. Different grass species promoted the abundance of specific members of the nifH community, suggesting a plant-based selection from the rhizosphere microbial community. The results show that rhizosphere and root environments of summer-active perennial grasses support significant amounts of non-symbiotic N2 fixation during summer compared with cropping soils, thus contributing to biological N inputs into the soil N cycle. Some pasture species also maintained N2 fixation in October (spring), when the grasses were dormant, similar to that found in soils under a cereal crop. Surface soils in the rainfed cropping regions of southern Australia are generally low in soil organic matter and thus have lower N-supply capacity. The greater volume of rhizosphere soil under perennial grasses and carbon inputs belowground can potentially change the balance between N immobilisation and mineralisation processes in the surface soils in favour of immobilisation, which in turn contributes to reduced N losses from leaching