Characterization of internalin genes in Listeria monocytogenes from food and humans, and their association with the invasion of Caco-2 cells

Internalins are surface proteins that are utilized by Listeria monocytogenes to facilitate its invasion into human intestinal epithelial cells. The expression of a full-length InlA is one of essential virulence factors for L. monocytogenes to cross the intestinal barrier in order to invade epithelial cells.https://doi.org/10.1186/s13099-019-0307-

Responses of sequential and hierarchical phenological events to warming and cooling in alpine meadows

Organisms' life cycles consist of hierarchical stages, from a single phenological stage (for example, flowering within a season), to vegetative and reproductive phases, to the total lifespan of the individual. Yet phenological events are typically studied in isolation, limiting our understanding of life history responses to climate change. Here, we reciprocally transfer plant communities along an elevation gradient to investigate plastic changes in the duration of sequential phenological events for six alpine species. We show that prolonged flowering leads to longer reproductive phases and activity periods when plants are moved to warmer locations. In contrast, shorter post-fruiting leaf and flowering stages led to shorter vegetative and reproductive phases, respectively, which resulted in shorter activity periods when plants were moved to cooler conditions. Therefore, phenological responses to warming and cooling do not simply mirror one another in the opposite direction, and low temperature may limit reproductive allocation in the alpine region

Molecular traces of alternative social organization in a termite genome

Although eusociality evolved independently within several orders of insects, research into the molecular underpinnings of the transition towards social complexity has been confined primarily to Hymenoptera (for example, ants and bees). Here we sequence the genome and stage-specific transcriptomes of the dampwood termite Zootermopsis nevadensis (Blattodea) and compare them with similar data for eusocial Hymenoptera, to better identify commonalities and differences in achieving this significant transition. We show an expansion of genes related to male fertility, with upregulated gene expression in male reproductive individuals reflecting the profound differences in mating biology relative to the Hymenoptera. For several chemoreceptor families, we show divergent numbers of genes, which may correspond to the more claustral lifestyle of these termites. We also show similarities in the number and expression of genes related to caste determination mechanisms. Finally, patterns of DNAmethylation and alternative splicing support

Comparative genomics reveals the hybrid origin of a macaque group

Although species can arise through hybridization, compelling evidence for hybrid speciation has been reported only rarely in animals. Here, we present phylogenomic analyses on genomes from 12 macaque species and show that the fascicularis group originated from an ancient hybridization between the sinica and silenus groups ~3.45 to 3.56 million years ago. The X chromosomes and low-recombination regions exhibited equal contributions from each parental lineage, suggesting that they were less affected by subsequent backcrossing and hence could have played an important role in maintaining hybrid integrity. We identified many reproduction-associated genes that could have contributed to the development of the mixed sexual phenotypes characteristic of the fascicularis group. The phylogeny within the silenus group was also resolved, and functional experimentation confirmed that all extant Western silenus species are susceptible to HIV-1 infection. Our study provides novel insights into macaque evolution and reveals a hybrid speciation event that has occurred only very rarely in primates

The oyster genome reveals stress adaptation and complexity of shell formation

The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is highly polymorphic and rich in repetitive sequences, with some transposable elements still actively shaping variation. Transcriptome studies reveal an extensive set of genes responding to environmental stress. The expansion of genes coding for heat shock protein 70 and inhibitors of apoptosis is probably central to the oyster's adaptation to sessile life in the highly stressful intertidal zone. Our analyses also show that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes. The oyster genome sequence fills a void in our understanding of the Lophotrochozoa. © 2012 Macmillan Publishers Limited. All rights reserved

Phylogenomic analyses provide insights into primate evolution

Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution

Investigation of Coulomb stress changes in south Tibet (central Himalayas) due to the 25th April 2015 M W 7.8 Nepal earthquake using a Coulomb stress transfer model

Abstract After M W 7.8 Nepal earthquake occurred, the rearrangement of stresses in the crust commonly leads to subsequent damaging earthquakes. We present the calculations of the coseismic stress changes that resulted from the 25th April event using models of regional faults designed according to south Tibet-Nepal structure, and show that some indicative significant stress increases. We calculate static stress changes caused by the displacement of a fault on which dislocations happen and an earthquake occurs. A M W 7.3 earthquake broke on 12 May at a distance of ~ 130 km SEE of the M W 7.8 earthquake, whose focus roughly located on high Coulomb stress change (CSC) site. Aftershocks (first 15 days after the mainshock) are associated with stress increase zone caused by the main rupture. We set receiver faults with specified strikes, dips, and rakes, on which the stresses imparted by the source fault are resolved. Four group normal faults to the north of the Nepal earthquake seismogenic fault were set as receiver faults and variant results followed. We provide a discussion on Coulomb stress transfer for the seismogenic fault, which is useful to identify potential future rupture zones

Anomalous crustal movements before great Wenchuan earthquake observed by GPS

Studies of GPS data carried out before and after the great Wenchuan earthquake of Ms8.0 on May 12, 2008 show that anomalous crustal movements occurred before the earthquake. Data from 4 pre-earthquake observation sessions at a dense network of stations show that there were prominent broad-ranged long- and mid-term anomalies in horizontal displacements and strain and in vertical displacements. Data from the fewer-numbered reference stations of continuous GPS observations since 1999 in West and South China showed short-term preseismic anomalies in horizontal displacements. The detection of co-seismic horizontal displacements at these stations supports the existence of the pre-earthquake anomalies. Results of single-epoch solutions of data from continuous-observation stations near the epicenter also show large imminent anomalies in vertical displacements. Although the Wenchuan earthquake was not predicted, these results give a strong indication that GPS should be the main observation technique for long-term, mid-term, short-term and imminent earthquake predictions